PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01464g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | RAV | ||||||||
Protein Properties | Length: 328aa MW: 38162.1 Da PI: 7.0886 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.7 | 5.8e-13 | 42 | 90 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s++kGV +grW A+I+ +kr++lg+f +++eAa a++ a+ +l+ge Peaxi162Scf01464g00006.1 42 SRFKGVV-GQHNGRWGAQIYA------NKRIWLGTFKSEKEAAMAYDSAAIRLRGE 90 6899996.4458*******99......8**********99**************97 PP | |||||||
2 | B3 | 88.5 | 5.3e-28 | 159 | 252 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f k+ltpsdv+k++rlv+pkkfa ++ ++++ e+ +l+++d+s r W+++++y+k+s+++v+t+GW++Fvk++ L Peaxi162Scf01464g00006.1 159 FTKELTPSDVGKLNRLVIPKKFALKYfpqvigkvdncENQEFEDSELVFYDTSRRLWKFRYCYWKSSQSFVFTRGWNRFVKDKSL 243 89*****************************99999977777899**************************************** PP -TT-EEEEE CS B3 75 kegDfvvFk 83 k++D++vF Peaxi162Scf01464g00006.1 244 KAKDTIVFN 252 ********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-16 | 42 | 98 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-7 | 42 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.02E-24 | 42 | 99 | No hit | No description |
PROSITE profile | PS51032 | 17.28 | 43 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-18 | 43 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-21 | 43 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 9.0E-32 | 156 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-27 | 157 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.47E-26 | 158 | 251 | No hit | No description |
PROSITE profile | PS50863 | 13.056 | 159 | 275 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-20 | 159 | 275 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-24 | 159 | 252 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEDVISSTTT YATENSSESS NNNQLHTKKR PRDEGKACNS TSRFKGVVGQ HNGRWGAQIY 60 ANKRIWLGTF KSEKEAAMAY DSAAIRLRGE DSHRNFPWTN LTLLEPSFQG QFSTEDILRM 120 IKDGSYPSKF DEFLKEKYEE NHPLNTLQGN EVFSYKQLFT KELTPSDVGK LNRLVIPKKF 180 ALKYFPQVIG KVDNCENQEF EDSELVFYDT SRRLWKFRYC YWKSSQSFVF TRGWNRFVKD 240 KSLKAKDTIV FNSCEYKIGP DEICNVFVID VVKANEVLPM ASEFHLQQAI EYDHEVETKE 300 CIMKIQSADR VVEPVMLFGQ QIGWTERQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-25 | 158 | 252 | 13 | 101 | DNA-binding protein RAV1 |
5os9_A | 3e-25 | 157 | 261 | 6 | 103 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-25 | 157 | 261 | 6 | 103 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771974.1 | 1e-147 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
Refseq | XP_016492322.1 | 1e-147 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C688 | 1e-86 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | A0A1S4BTX1 | 1e-146 | A0A1S4BTX1_TOBAC; AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
TrEMBL | A0A1U7WBE0 | 1e-146 | A0A1U7WBE0_NICSY; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
STRING | XP_009771974.1 | 1e-146 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 8e-88 | RAV family protein |