PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01343g00153.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 331aa    MW: 38162.6 Da    PI: 9.5612
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01343g00153.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.87.5e-1877162290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                                Yn+YA + GF vrk  ++++ rn+e+t+  f Cs+eg+ ++ +   e++ r+r e r+gC a++k k + +g+wev +++  H+
  Peaxi162Scf01343g00153.1  77 AYNTYAVTKGFGVRKGVKTHN-RNKEMTRCLFLCSCEGQCAKLSPY-EERTRKRLEYRCGCMARIKFKIS-NGTWEVCEFDDVHS 158
                               5***************99998.7888***************99998.99999****************99.************** PP

                      FAR1  87 Hela 90 
                               H++ 
  Peaxi162Scf01343g00153.1 159 HPMI 162
                               *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-1577162IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKFPYFKYEC PLLNKYYLYV INFFVIFILN YIKIIIVDHT VKDQEFSTRV HNVYNINKDF  60
VFEIGMKFGS EEESYNAYNT YAVTKGFGVR KGVKTHNRNK EMTRCLFLCS CEGQCAKLSP  120
YEERTRKRLE YRCGCMARIK FKISNGTWEV CEFDDVHSHP MIEENLRHFI LSGRKLTSST  180
KSILGSMVDA GIRTKKAVRY LQNEAGGIEN AGFIEQDAHN FIQAYKXGTA NDVDSEEVAR  240
KYLYQAKVDI TKLQIDPQGS KDLILDPIKK KRKGNGYGRL KPNIEKRRKS ASQKASKDKI  300
GLSHKQQSMS TMAVTVDEQS SLSQMNLDLE V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270288KRKGNGYGRLKPNIEKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628526.11e-102PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A1J6JS561e-104A0A1J6JS56_NICAT; Protein far1-related sequence 5
STRINGXP_009628526.11e-101(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1726931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-17FAR1-related sequence 10