PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01294g00224.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Trihelix

Protein Properties

Length: 1220aa MW: 135931 Da PI: 6.9654

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01294g00224.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.9	1.3e-28	68	151	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+laL+++r+em+ +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++k+g+ +++ + +t+++f+ l Peaxi162Scf01294g00224.1 68 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASKS--DGKTYRFFEAL 150 8******************************************************************974..5567***99 PP trihelix 86 e 86 e Peaxi162Scf01294g00224.1 151 E 151 8 PP
2	trihelix	101	9.7e-32	466	551	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+k+e+ aLi++r+ ++ +++++ k+plWee+s+ mr g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql Peaxi162Scf01294g00224.1 466 RWPKEEIEALIRLRTCLDLKYQENVPKGPLWEEISAGMRNLGYNRNAKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQL 549 8*******************************************************************8.99********* PP trihelix 86 ea 87 ea Peaxi162Scf01294g00224.1 550 EA 551 85 PP
3	trihelix	38.3	3.5e-12	665	712	37	86
trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 k+++ g++rs+k+Ckek+en+ k+++++k+g+ +++ + +t+++f+ le Peaxi162Scf01294g00224.1 665 KLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASKS--DGKTYRFFEALE 712 67899**************************974..5567***998 PP
4	trihelix	101	9.7e-32	1027	1112	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW+k+e+ aLi++r+ ++ +++++ k+plWee+s+ mr g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ Peaxi162Scf01294g00224.1 1027 RWPKEEIEALIRLRTCLDLKYQENVPKGPLWEEISAGMRNLGYNRNAKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFH 1108 8*******************************************************************8.99***** PP trihelix 84 qlea 87 qlea Peaxi162Scf01294g00224.1 1109 QLEA 1112 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.12	61	125	IPR017877	Myb-like domain
SMART	SM00717	0.0023	65	127	IPR001005	SANT/Myb domain
CDD	cd12203	6.32E-25	67	132	No hit	No description
Pfam	PF13837	2.7E-18	67	152	No hit	No description
PROSITE profile	PS50090	7.457	459	523	IPR017877	Myb-like domain
SMART	SM00717	0.0015	463	525	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.1E-4	464	522	IPR009057	Homeodomain-like
CDD	cd12203	1.38E-28	465	530	No hit	No description
Pfam	PF13837	6.8E-22	465	552	No hit	No description
Pfam	PF13837	2.3E-7	664	713	No hit	No description
PROSITE profile	PS50090	7.457	1020	1084	IPR017877	Myb-like domain
SMART	SM00717	0.0015	1024	1086	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.1E-4	1025	1083	IPR009057	Homeodomain-like
CDD	cd12203	1.38E-28	1026	1091	No hit	No description
Pfam	PF13837	6.8E-22	1026	1113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1220 aa Download sequence Send to blast
MLGVSSGLIN TTSADGATST QAAPQQPPLA ATVAESGGSS EGGGGGGGDM TVGGGFNEEG 60 ERNSGGNRWP RQETLALLRI RSEMDVVFRD SSLKGPLWEE VSRKLADLGY HRSAKKCKEK 120 FENVYKYHRR TKDGRASKSD GKTYRFFEAL EAFETNPSHS LPPPPLAATP ITMAMPMRGN 180 ATMNNPPMPM SQTTVSSTQI PFTISQNTVP TAATPIVNHP LNNNVSPLPV SSQPSQPPPP 240 AQPNITLNQI NRAQGNTSFL SNSTSSSSTS SDEDIQRRHG KKRKWKDFFE GLMKDVIEKQ 300 EELQKKFLET LEKRERERLV REETWRVQEM ARMNREHDLL VQERSMAAAK DATIIAFLQK 360 ITGQQNIQIP NITTNTSPTQ IQLQEKPLVA PPQSQPQKQT QTPPPPPATA VSLPMPVPAP 420 AIAVSLPMPV PAPLPTQALV PVPARTMEVA KLDNGGENFT QASSSRWPKE EIEALIRLRT 480 CLDLKYQENV PKGPLWEEIS AGMRNLGYNR NAKRCKEKWE NINKYYKKVK ESNKKRPEDS 540 KTCPYFHQLE ALYKEKAKTE VVPITTTAFG LKPENNPSMV PVMAQPEQQW QPLGLDQQQV 600 HHQALNNMPD HDNESDSMDE DEEEDDDDDD EGNVYEIVTN KQPSSMAAST TTAAATATKF 660 LLVRKLADLG YHRSAKKCKE KFENVYKYHR RTKDGRASKS DGKTYRFFEA LEAFETNPSH 720 SLPPPPLAAT PITMAMPMRG NATMNNPPMP MSQTTVSSTQ IPFTISQNTV PTAATPIVNH 780 PLNNNVSPLP VSSQPSQPPP PAQPNITLNQ INRAQGNTSF LSNSTSSSST SSDEDIQRRH 840 GKKRKWKDFF EGLMKDVIEK QEELQKKFLE TLEKRERERL VREETWRVQE MARMNREHDL 900 LVQERSMAAA KDATIIAFLQ KITGQQNIQI PNITTNTSPT QIQLQEKPLV APPQSQPQKQ 960 TQTPPPPPAT AVSLPMPVPA PAIAVSLPMP VPAPLPTQAL VPVPARTMEV AKLDNGGENF 1020 TQASSSRWPK EEIEALIRLR TCLDLKYQEN VPKGPLWEEI SAGMRNLGYN RNAKRCKEKW 1080 ENINKYYKKV KESNKKRPED SKTCPYFHQL EALYKEKAKT EVVPITTTAF GLKPENNPSM 1140 VPVMAQPEQQ WQPLGLDQQQ VHHQALNNMP DHDNESDSMD EDEEEDDDDD DEGNVYEIVT 1200 NKQPSSMAAS TTTAAATATV

Sequence ? help Back to Top

Protein Sequence Length: 1220 aa Download sequence Send to blast

MLGVSSGLIN TTSADGATST QAAPQQPPLA ATVAESGGSS EGGGGGGGDM TVGGGFNEEG  60
ERNSGGNRWP RQETLALLRI RSEMDVVFRD SSLKGPLWEE VSRKLADLGY HRSAKKCKEK  120
FENVYKYHRR TKDGRASKSD GKTYRFFEAL EAFETNPSHS LPPPPLAATP ITMAMPMRGN  180
ATMNNPPMPM SQTTVSSTQI PFTISQNTVP TAATPIVNHP LNNNVSPLPV SSQPSQPPPP  240
AQPNITLNQI NRAQGNTSFL SNSTSSSSTS SDEDIQRRHG KKRKWKDFFE GLMKDVIEKQ  300
EELQKKFLET LEKRERERLV REETWRVQEM ARMNREHDLL VQERSMAAAK DATIIAFLQK  360
ITGQQNIQIP NITTNTSPTQ IQLQEKPLVA PPQSQPQKQT QTPPPPPATA VSLPMPVPAP  420
AIAVSLPMPV PAPLPTQALV PVPARTMEVA KLDNGGENFT QASSSRWPKE EIEALIRLRT  480
CLDLKYQENV PKGPLWEEIS AGMRNLGYNR NAKRCKEKWE NINKYYKKVK ESNKKRPEDS  540
KTCPYFHQLE ALYKEKAKTE VVPITTTAFG LKPENNPSMV PVMAQPEQQW QPLGLDQQQV  600
HHQALNNMPD HDNESDSMDE DEEEDDDDDD EGNVYEIVTN KQPSSMAAST TTAAATATKF  660
LLVRKLADLG YHRSAKKCKE KFENVYKYHR RTKDGRASKS DGKTYRFFEA LEAFETNPSH  720
SLPPPPLAAT PITMAMPMRG NATMNNPPMP MSQTTVSSTQ IPFTISQNTV PTAATPIVNH  780
PLNNNVSPLP VSSQPSQPPP PAQPNITLNQ INRAQGNTSF LSNSTSSSST SSDEDIQRRH  840
GKKRKWKDFF EGLMKDVIEK QEELQKKFLE TLEKRERERL VREETWRVQE MARMNREHDL  900
LVQERSMAAA KDATIIAFLQ KITGQQNIQI PNITTNTSPT QIQLQEKPLV APPQSQPQKQ  960
TQTPPPPPAT AVSLPMPVPA PAIAVSLPMP VPAPLPTQAL VPVPARTMEV AKLDNGGENF  1020
TQASSSRWPK EEIEALIRLR TCLDLKYQEN VPKGPLWEEI SAGMRNLGYN RNAKRCKEKW  1080
ENINKYYKKV KESNKKRPED SKTCPYFHQL EALYKEKAKT EVVPITTTAF GLKPENNPSM  1140
VPVMAQPEQQ WQPLGLDQQQ VHHQALNNMP DHDNESDSMD EDEEEDDDDD DEGNVYEIVT  1200
NKQPSSMAAS TTTAAATATV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	836	844	QRRHGKKRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	7e-44	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	7e-44	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009594163.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A1S4DN33	0.0	A0A1S4DN33_TOBAC; trihelix transcription factor GT-2-like
STRING	XP_009594163.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-55	Trihelix family protein