PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01294g00224.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | Trihelix | ||||||||
Protein Properties | Length: 1220aa MW: 135931 Da PI: 6.9654 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 90.9 | 1.3e-28 | 68 | 151 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+laL+++r+em+ +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++k+g+ +++ + +t+++f+ l Peaxi162Scf01294g00224.1 68 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASKS--DGKTYRFFEAL 150 8********************************************************************974..5567*****99 PP trihelix 86 e 86 e Peaxi162Scf01294g00224.1 151 E 151 8 PP | |||||||
2 | trihelix | 101 | 9.7e-32 | 466 | 551 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+k+e+ aLi++r+ ++ +++++ k+plWee+s+ mr g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql Peaxi162Scf01294g00224.1 466 RWPKEEIEALIRLRTCLDLKYQENVPKGPLWEEISAGMRNLGYNRNAKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQL 549 8*********************************************************************8.99*********** PP trihelix 86 ea 87 ea Peaxi162Scf01294g00224.1 550 EA 551 85 PP | |||||||
3 | trihelix | 38.3 | 3.5e-12 | 665 | 712 | 37 | 86 |
trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 k+++ g++rs+k+Ckek+en+ k+++++k+g+ +++ + +t+++f+ le Peaxi162Scf01294g00224.1 665 KLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASKS--DGKTYRFFEALE 712 67899****************************974..5567*****998 PP | |||||||
4 | trihelix | 101 | 9.7e-32 | 1027 | 1112 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW+k+e+ aLi++r+ ++ +++++ k+plWee+s+ mr g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ Peaxi162Scf01294g00224.1 1027 RWPKEEIEALIRLRTCLDLKYQENVPKGPLWEEISAGMRNLGYNRNAKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFH 1108 8*********************************************************************8.99********* PP trihelix 84 qlea 87 qlea Peaxi162Scf01294g00224.1 1109 QLEA 1112 **85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.12 | 61 | 125 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0023 | 65 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 6.32E-25 | 67 | 132 | No hit | No description |
Pfam | PF13837 | 2.7E-18 | 67 | 152 | No hit | No description |
PROSITE profile | PS50090 | 7.457 | 459 | 523 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0015 | 463 | 525 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-4 | 464 | 522 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 1.38E-28 | 465 | 530 | No hit | No description |
Pfam | PF13837 | 6.8E-22 | 465 | 552 | No hit | No description |
Pfam | PF13837 | 2.3E-7 | 664 | 713 | No hit | No description |
PROSITE profile | PS50090 | 7.457 | 1020 | 1084 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0015 | 1024 | 1086 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-4 | 1025 | 1083 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 1.38E-28 | 1026 | 1091 | No hit | No description |
Pfam | PF13837 | 6.8E-22 | 1026 | 1113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1220 aa Download sequence Send to blast |
MLGVSSGLIN TTSADGATST QAAPQQPPLA ATVAESGGSS EGGGGGGGDM TVGGGFNEEG 60 ERNSGGNRWP RQETLALLRI RSEMDVVFRD SSLKGPLWEE VSRKLADLGY HRSAKKCKEK 120 FENVYKYHRR TKDGRASKSD GKTYRFFEAL EAFETNPSHS LPPPPLAATP ITMAMPMRGN 180 ATMNNPPMPM SQTTVSSTQI PFTISQNTVP TAATPIVNHP LNNNVSPLPV SSQPSQPPPP 240 AQPNITLNQI NRAQGNTSFL SNSTSSSSTS SDEDIQRRHG KKRKWKDFFE GLMKDVIEKQ 300 EELQKKFLET LEKRERERLV REETWRVQEM ARMNREHDLL VQERSMAAAK DATIIAFLQK 360 ITGQQNIQIP NITTNTSPTQ IQLQEKPLVA PPQSQPQKQT QTPPPPPATA VSLPMPVPAP 420 AIAVSLPMPV PAPLPTQALV PVPARTMEVA KLDNGGENFT QASSSRWPKE EIEALIRLRT 480 CLDLKYQENV PKGPLWEEIS AGMRNLGYNR NAKRCKEKWE NINKYYKKVK ESNKKRPEDS 540 KTCPYFHQLE ALYKEKAKTE VVPITTTAFG LKPENNPSMV PVMAQPEQQW QPLGLDQQQV 600 HHQALNNMPD HDNESDSMDE DEEEDDDDDD EGNVYEIVTN KQPSSMAAST TTAAATATKF 660 LLVRKLADLG YHRSAKKCKE KFENVYKYHR RTKDGRASKS DGKTYRFFEA LEAFETNPSH 720 SLPPPPLAAT PITMAMPMRG NATMNNPPMP MSQTTVSSTQ IPFTISQNTV PTAATPIVNH 780 PLNNNVSPLP VSSQPSQPPP PAQPNITLNQ INRAQGNTSF LSNSTSSSST SSDEDIQRRH 840 GKKRKWKDFF EGLMKDVIEK QEELQKKFLE TLEKRERERL VREETWRVQE MARMNREHDL 900 LVQERSMAAA KDATIIAFLQ KITGQQNIQI PNITTNTSPT QIQLQEKPLV APPQSQPQKQ 960 TQTPPPPPAT AVSLPMPVPA PAIAVSLPMP VPAPLPTQAL VPVPARTMEV AKLDNGGENF 1020 TQASSSRWPK EEIEALIRLR TCLDLKYQEN VPKGPLWEEI SAGMRNLGYN RNAKRCKEKW 1080 ENINKYYKKV KESNKKRPED SKTCPYFHQL EALYKEKAKT EVVPITTTAF GLKPENNPSM 1140 VPVMAQPEQQ WQPLGLDQQQ VHHQALNNMP DHDNESDSMD EDEEEDDDDD DEGNVYEIVT 1200 NKQPSSMAAS TTTAAATATV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 836 | 844 | QRRHGKKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 7e-44 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 7e-44 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594163.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A1S4DN33 | 0.0 | A0A1S4DN33_TOBAC; trihelix transcription factor GT-2-like | ||||
STRING | XP_009594163.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 5e-55 | Trihelix family protein |