PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00983g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C2H2 | ||||||||
Protein Properties | Length: 399aa MW: 44772.4 Da PI: 8.156 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.3 | 3.4e-07 | 228 | 250 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H Peaxi162Scf00983g00008.1 228 HYCQVCGKGFKRDANLRMHMRAH 250 68*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.15E-6 | 226 | 253 | No hit | No description |
PROSITE profile | PS50157 | 12.653 | 228 | 255 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-6 | 228 | 254 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0034 | 228 | 250 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.0024 | 229 | 248 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 230 | 250 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 75 | 283 | 316 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 321 | 343 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MIQGTTNTPC FLNTNPQNIP LCASAIHHNL QEDANISSSL GHSHQPSSFM YNLSLLKEKV 60 HHVQSLAAMF ISLDDQAIQS SNESTAMAIA SMGTLIQEII TTASSLMFSC QKMTLGSTST 120 TNHNSSRFLE PSQIKIQDDS QVDPLTQGFY SNNETFDWYE ENYASCNNNY EDNKNHTSTT 180 IAISDHHSNE LGKRELMSST PKEKVIMNGE NYDIVELDAA DLLAKYTHYC QVCGKGFKRD 240 ANLRMHMRAH GDEYKSSAAL RNPSKNNGNV GTNDGLSKIS NKYSCPQEGC RWNRKHAKFQ 300 PLKSMICVKN HYKRSHCPKM YVCKRCNKKQ FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK 360 DKLMGHVTLF VGHSPIINCL PKIEKHDLQN NGQSSSITG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799889.1 | 0.0 | PREDICTED: zinc finger protein STOP1 homolog | ||||
Refseq | XP_016478397.1 | 0.0 | PREDICTED: zinc finger protein STOP1 homolog | ||||
Swissprot | Q0WT24 | 1e-108 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A1S4ANS9 | 0.0 | A0A1S4ANS9_TOBAC; zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A1U7YKX1 | 0.0 | A0A1U7YKX1_NICSY; zinc finger protein STOP1 homolog | ||||
STRING | XP_009799889.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11265 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-110 | C2H2 family protein |