PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00815g00352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 350aa MW: 38595.7 Da PI: 7.5205 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 98 | 122 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y +C+FaHg Peaxi162Scf00815g00352.1 98 FKTKLCCKFRA-GVCPYITNCNFAHG 122 69*********.*************8 PP | |||||||
2 | zf-CCCH | 19.3 | 2e-06 | 178 | 198 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ C+yG++C+F H+ Peaxi162Scf00815g00352.1 178 CKKFYTEEGCPYGESCTFLHD 198 99999999************7 PP | |||||||
3 | zf-CCCH | 44.3 | 2.9e-14 | 233 | 258 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Peaxi162Scf00815g00352.1 233 WKTRICNKWETTGYCPFGSKCHFAHG 258 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 7.33E-8 | 95 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-14 | 95 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.014 | 97 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.418 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-5 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.563 | 172 | 200 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.37 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.02E-6 | 173 | 200 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-8 | 174 | 200 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-10 | 229 | 263 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-17 | 229 | 263 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 232 | 260 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-9 | 232 | 259 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-11 | 233 | 258 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDFMGEAGPD STASGGAFDS WGPNFSDQAV WATEDDYRAW NVGSFNETPS NSSQDGRHSQ 60 NRSGSEPPNK RSRNAQGSDA HVINTNTNNA KTIGKMFFKT KLCCKFRAGV CPYITNCNFA 120 HGIEELRKPP PNWQEIVAAH EGDRGGVIVE HREEHQIPIL TSPDSRVESL RSSKLRHCKK 180 FYTEEGCPYG ESCTFLHDEQ SRARESVAIS VTPTVGGFGN NATGAASLKP SNWKTRICNK 240 WETTGYCPFG SKCHFAHGVA ELNKYGGGPV ETDGRDSYSL PSDLKQGDGS FKTTETMVPK 300 IILAPHHLGQ GVQGQRVTGT GERPGRRFFQ KWKGPDRISK IYGDWIDDIE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347340.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Refseq | XP_015164273.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Refseq | XP_015164274.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Swissprot | Q9LQM3 | 1e-114 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | M1CK60 | 0.0 | M1CK60_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400069247 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3729 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-114 | C3H family protein |