PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00769g00012.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 409aa MW: 46551.4 Da PI: 8.4377

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00769g00012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.9	2.6e-21	53	128	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fYn YA++vGF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v++ ++gkw+++++++eH Peaxi162Scf00769g00012.1 53 EFYNLYATKVGFRIRIGQLYRSRVDGSVVSRRFVCSKEGFQTT--------------SRTGCPAFIRVRRVDSGKWVLANIKKEH 123 6*************************************976..............589********************* PP FAR1 86 nHela 90 nHel Peaxi162Scf00769g00012.1 124 NHELE 128 *96 PP
2	FAR1	67.6	3.1e-21	201	276	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w v+++++eH Peaxi162Scf00769g00012.1 201 EFYHTYAANTGFRVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQETGRWLVDRCQNEH 271 6************************************9998..............4899******************** PP FAR1 86 nHela 90 nHel Peaxi162Scf00769g00012.1 272 NHELD 276 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-17	53	128	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.3E-17	201	277	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MSREELGNTM TVRANPAGLA IVKTNDLRDD DEKESRLEPN VGLEFDSAED AQEFYNLYAT 60 KVGFRIRIGQ LYRSRVDGSV VSRRFVCSKE GFQTTSRTGC PAFIRVRRVD SGKWVLANIK 120 KEHNHELEHP GEIYPSRIQR KIIPSPKSSV VSTRTGLRSI DEDNPSGIID LKRLKREKVD 180 GEPTGEPYKG LEFISAGEAY EFYHTYAANT GFRVRIGQLF RSKNDGSITS RRFVCSKEGH 240 QHPSRVGCGA FMRIQRQETG RWLVDRCQNE HNHELDPASD ASGGVSVASK GFKEEASILH 300 SKDPMEDQSR KLYTITMFKV FQKELLECYN YVGIKINIEG AISRYLDAKY GILRDVDSGG 360 TSQDYNALML WSLREEARNY IEAGTASLER YKLAFEIMQE GRRNLCWQN

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MSREELGNTM TVRANPAGLA IVKTNDLRDD DEKESRLEPN VGLEFDSAED AQEFYNLYAT  60
KVGFRIRIGQ LYRSRVDGSV VSRRFVCSKE GFQTTSRTGC PAFIRVRRVD SGKWVLANIK  120
KEHNHELEHP GEIYPSRIQR KIIPSPKSSV VSTRTGLRSI DEDNPSGIID LKRLKREKVD  180
GEPTGEPYKG LEFISAGEAY EFYHTYAANT GFRVRIGQLF RSKNDGSITS RRFVCSKEGH  240
QHPSRVGCGA FMRIQRQETG RWLVDRCQNE HNHELDPASD ASGGVSVASK GFKEEASILH  300
SKDPMEDQSR KLYTITMFKV FQKELLECYN YVGIKINIEG AISRYLDAKY GILRDVDSGG  360
TSQDYNALML WSLREEARNY IEAGTASLER YKLAFEIMQE GRRNLCWQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	2e-69	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006339064.1	1e-170	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
Refseq	XP_006339066.1	1e-170	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
Refseq	XP_015165072.1	1e-170	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
Swissprot	Q9M8J3	1e-100	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A3Q7JGE1	1e-165	A0A3Q7JGE1_SOLLC; Uncharacterized protein
STRING	Solyc10g084220.1.1	1e-168	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-91	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]