PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00677g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 284aa MW: 32027.6 Da PI: 7.2181 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 5.7e-13 | 135 | 179 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + + +G+g+Wk I+r +t+ q+ s+ qky Peaxi162Scf00677g00012.1 135 PWTEEEHQLFLMGLNTFGKGDWKNISRVYVVSKTPTQVASHAQKY 179 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0046 | 31 | 83 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.03 | 31 | 81 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.94E-6 | 33 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00221 | 35 | 81 | No hit | No description |
PROSITE profile | PS51294 | 17.249 | 127 | 184 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.33E-17 | 129 | 185 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-17 | 132 | 183 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-10 | 132 | 182 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-9 | 133 | 181 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-10 | 135 | 179 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.88E-10 | 135 | 180 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MEWQKFLHSN SQESTFGQFN APHINHEVVE KTGQWTLEEK QVFDNALSKL NPASPSFFDY 60 VASILPHKSL EEIKNHYLNL FLIPENNVVA AADDDYDPDH QHYQLPQADD SDMVGRPVSS 120 PQVEYNRPRR RKGIPWTEEE HQLFLMGLNT FGKGDWKNIS RVYVVSKTPT QVASHAQKYF 180 NRQNSTTPLG RRRPSINDIQ TVTLAPASTT THQINGTLAQ GASSMPSLHY PYNVAPMSSG 240 HGNFGRFFSG AEASSSSSNN MVQQTINCNN INIHLKPVSP RPFF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 131 | PRRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622214.1 | 1e-103 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1S4AVQ7 | 1e-101 | A0A1S4AVQ7_TOBAC; transcription factor DIVARICATA-like | ||||
STRING | XP_009622214.1 | 1e-102 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5234 | 20 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 8e-36 | MYB family protein |