PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00624g00067.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

TALE

Protein Properties

Length: 731aa MW: 80798.8 Da PI: 7.2599

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00624g00067.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	445	482	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Peaxi162Scf00624g00067.1 445 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 482 554459******************************88 PP
2	BELL	119.3	1.8e-38	308	379	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+s+l+eV++rY+qy++q+q++++sFe++ag+gsak+Yt+lAl++iS++FrcLkdai++qi Peaxi162Scf00624g00067.1 308 QRQELQMKKAKLVSMLDEVEQRYRQYHHQMQIIVASFEQAAGIGSAKSYTQLALHTISKQFRCLKDAISGQI 379 69*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.1E-61	230	377	IPR006563	POX domain
Pfam	PF07526	8.8E-48	238	376	IPR006563	POX domain
PROSITE profile	PS50071	12.05	423	486	IPR001356	Homeobox domain
SMART	SM00389	4.2E-10	426	490	IPR001356	Homeobox domain
CDD	cd00086	2.27E-12	426	487	No hit	No description
SuperFamily	SSF46689	5.56E-17	427	493	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-29	429	492	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	443	482	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MYYQGSSEIQ ADGLQTLYLM NPNYIGYADT QQHQQQQHQQ HLQPANMFFL NSAISGNLPH 60 GQIPSQAHTQ HFVGVPLQAN LQDLSRPSVH EAISASHHGL FQRLWSPADQ NSGGCGVGDG 120 ENGSHSHVQS SSVVSPGSGI GPTTDFTSQL GFQRPGTLVS PTQQHQGLSL SLSPQQQQQQ 180 KQQQMSFRSL PLDHHEISPH ENHQVGILSS SSSPRTNTQS NDNIRASGTS SFSFPNGMIL 240 GSKYLKAAQE LLDEVVNVGQ SIKADGTKDK HKVDNESMPL ASDVVVPTSG SGESSSQKNS 300 VVELTTAQRQ ELQMKKAKLV SMLDEVEQRY RQYHHQMQII VASFEQAAGI GSAKSYTQLA 360 LHTISKQFRC LKDAISGQIK ATSKSLGEEE SLGGKVEGSS RLKFVDHHLR QQRALQQLGM 420 MQPNAWRPQR GLPERAVSVL RAWLFEHFLH PYPKDSDKIM LAKQTGLTRS QVSNWFINAR 480 VRLWKPMVEE MYLEEVKNNQ EQNGLEENIN KNEPNKEFAS KSSVPHDTSK LRKDKQLPSS 540 MQDASPTDIS TSTISTSPNG GSLPGFSFIG SLNMENTAER NTKKPRNDMQ NSSGSILSVD 600 TQMKAAETNR GDNFNDEKQT RENYPLMSAY TMGEFGRFNP EQLATNFQGN GVSLTLGLPP 660 SENLALSGSH QQNSLPNQNI GLGSRLEMGR IDSHYNRMIN PQASHPTISY ENIDFQSGKR 720 YAAQLLPDFV S

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MYYQGSSEIQ ADGLQTLYLM NPNYIGYADT QQHQQQQHQQ HLQPANMFFL NSAISGNLPH  60
GQIPSQAHTQ HFVGVPLQAN LQDLSRPSVH EAISASHHGL FQRLWSPADQ NSGGCGVGDG  120
ENGSHSHVQS SSVVSPGSGI GPTTDFTSQL GFQRPGTLVS PTQQHQGLSL SLSPQQQQQQ  180
KQQQMSFRSL PLDHHEISPH ENHQVGILSS SSSPRTNTQS NDNIRASGTS SFSFPNGMIL  240
GSKYLKAAQE LLDEVVNVGQ SIKADGTKDK HKVDNESMPL ASDVVVPTSG SGESSSQKNS  300
VVELTTAQRQ ELQMKKAKLV SMLDEVEQRY RQYHHQMQII VASFEQAAGI GSAKSYTQLA  360
LHTISKQFRC LKDAISGQIK ATSKSLGEEE SLGGKVEGSS RLKFVDHHLR QQRALQQLGM  420
MQPNAWRPQR GLPERAVSVL RAWLFEHFLH PYPKDSDKIM LAKQTGLTRS QVSNWFINAR  480
VRLWKPMVEE MYLEEVKNNQ EQNGLEENIN KNEPNKEFAS KSSVPHDTSK LRKDKQLPSS  540
MQDASPTDIS TSTISTSPNG GSLPGFSFIG SLNMENTAER NTKKPRNDMQ NSSGSILSVD  600
TQMKAAETNR GDNFNDEKQT RENYPLMSAY TMGEFGRFNP EQLATNFQGN GVSLTLGLPP  660
SENLALSGSH QQNSLPNQNI GLGSRLEMGR IDSHYNRMIN PQASHPTISY ENIDFQSGKR  720
YAAQLLPDFV S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	432	490	5	63	Homeobox protein Meis2
3k2a_B	5e-16	432	490	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406698	0.0	AF406698.1 Solanum tuberosum BEL1-related homeotic protein 11 (Bel11) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629592.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-124	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1S3X9F7	0.0	A0A1S3X9F7_TOBAC; BEL1-like homeodomain protein 1
STRING	XP_009629592.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-108	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]