PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00547g00610.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARF
Protein Properties Length: 1105aa    MW: 123648 Da    PI: 6.6106
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00547g00610.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.6e-22126226198
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iyr++++r++lt+GW+ F ++++L++gD
  Peaxi162Scf00547g00610.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QELMARDLHDQAWTFRHIYRGQPKRHLLTTGWSVFISSKRLCAGD 208
                               99*****************************954.5444.38******************************************* PP

                               EEEEEE-SSSEE..EEEEE- CS
                        B3  79 fvvFkldgrsefelvvkvfr 98 
                               +v+F +d  ++ +l++++ r
  Peaxi162Scf00547g00610.1 209 SVLFIRD--DKSQLLLGIKR 226
                               *****54..45556888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-43114255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-40118241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-17125226No hitNo description
PROSITE profilePS5086311.942126228IPR003340B3 DNA binding domain
SMARTSM010195.8E-21126228IPR003340B3 DNA binding domain
PfamPF023621.1E-19126227IPR003340B3 DNA binding domain
PfamPF065072.3E-35252334IPR010525Auxin response factor
SuperFamilySSF542773.38E-99691056No hitNo description
PfamPF023091.3E-99711064IPR033389AUX/IAA domain
PROSITE profilePS5174526.5569781071IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1105 aa     Download sequence    Send to blast
MKAPTNGYVP NSGEGERKVM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDGIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDQEALL LSDMGLKQNK  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELMARD LHDQAWTFRH  180
IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDDKSQL LLGIKRANKQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQI SLGMRFRMMF  300
ETEESGIRRY MGTITGISDL DPVRWKSSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR PKFPKQTSFP GDESDIENAL KRGMPWIGDE FGAKDAPSSI FPGLSLVQWM  420
SMQQNNHVSV AQSGFPNVLH SNLGTDDHSK LLNFQSPTLA TPGLQFNKPT QLNQQFGQSQ  480
QPPLVWPQQQ QQSLQSPASV QQQQHTLLQQ QQQQQQQQQQ QQQQQQQQQQ QQQHTLQQQS  540
QQHVLQQQQL QPQLHQQAQH QLQQQQRPPQ QQQLTMNSSP VNPCVSPNQI PNQSFPQAAL  600
YAQLQQQQLL SASTQSQQNA PVNRNPFPST SLAQDFPFQQ QVEQSNLLQK SQQQQTMLQQ  660
APPQLMQQSL MQRPLVQQSS QQSLTEQQLQ LFNKLQQQQQ QQQQRAQLLS PVSSTLEPRL  720
PRQQQNRQPQ ELQFAHQQLS SNNMTTATHL QSPQYPVNQF QGQHKSPITI KALSGATDGD  780
APSCSTSPST NNFQVSPTNF LTKNQGQAIL VEDSIIDPSQ EQSKSEFRIK LEQPFSKGPE  840
QSKYKGNGTD NLEAASSTTS YGLDSSGFNF SLPALCGEGD VQSHSRNSLP SAANIDGLTP  900
DALLSRDYDS GKDMQNLFSP FGNTPRDIET ELSAAGISSQ PFGVPNMSYK ARCSNDLAVN  960
DTGVLNSNSW TNQTQRMRTY TKVQKRGSVG RTIDVTRYKG YDELRHDLAR MFGIEGQLED  1020
PQRTEWKLVY VDHENDILLV GDDPWEEFVS CVQSIKVLSS AEVQQMSLDG DLGNVPVPNQ  1080
ASSGTDSGNA WRAHYDDNSA ASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1731535545388Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1215450.0EF121545.1 Solanum lycopersicum auxin response factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016514516.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A1S4DM730.0A0A1S4DM73_TOBAC; Auxin response factor
STRINGXP_009791842.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19