PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00540g00026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 689aa MW: 75109.3 Da PI: 6.3515 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.5e-09 | 260 | 280 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg Peaxi162Scf00540g00026.1 260 PCPDFRK-GTCQRGDACEYAHG 280 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 2.3E-17 | 16 | 156 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.95E-18 | 24 | 166 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 8.8E-9 | 53 | 129 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.759 | 60 | 167 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0039 | 60 | 90 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 3.89E-14 | 62 | 156 | No hit | No description |
PROSITE profile | PS50088 | 10.633 | 95 | 130 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.013 | 95 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.6E-5 | 255 | 281 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 259 | 282 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.873 | 260 | 282 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-6 | 260 | 280 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 288 | 318 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MEAEIQKQKD HVPDFSQLLE LSASDDITNF KKAVEEEGHD INEVGLWYGR RIGVKKMGYE 60 ERTPLMIAAT FGSKQVLNYM LEKGCADVNQ ACGSDKATAL HCAITGDSAA LLEVVKLLLD 120 TSADVNLVDS NGKRPADLIL SRSCLGSRRK MLEYMLGGGS NPEEGSELIE QIISEQAEEK 180 LLLTPTVCKY GSEKKEYPAD PSLPDIKNGI YGTDDFRMYI FKVKPCSRAY SHDWTECPFV 240 HPGENARRRD PRKYHYSCVP CPDFRKGTCQ RGDACEYAHG IFECWLHPAQ YRTRMCKDET 300 SCTRRVCFFA HKPEELRPLY PSTGSAVPSP RSYSTGASAL DITAITPLAL GSPSVMMPPT 360 STPPMSPSAG APSVGGSLWP CQSTLATPTL QLPVSRLKAA ISARDVELDN SLLGFESHHL 420 RQDQLMDDLS ALSSPSGWNN SSARAAAFAA SSSDRNSELG RHGGIKPTNL DDFFSTLDSK 480 ILSQLQGLTL DGVSPQLQSP KGMQMRQNMN QQLMTSYSSG HSSPSFRTSS SSFGIDPSCA 540 ATAALSSRSA AFAKRSQSFI DRSTVSHFSG ISSSISAASP TPSNLSSWGS PDGKLDWGIQ 600 KEELNKLRKS ASFGLRSSGS RLPMSEPSNL DSSIEPDVSW VQSLVKDSPA VSSGKFAMEN 660 QQYHLNTSRG SETIPTWVDL YMEQEQTVA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795434.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X1 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A1U7Y856 | 0.0 | A0A1U7Y856_NICSY; zinc finger CCCH domain-containing protein 66-like isoform X1 | ||||
STRING | XP_009795434.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2558 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-157 | C3H family protein |