PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00460g00061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 28195.1 Da PI: 5.9226 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Peaxi162Scf00460g00061.1 84 YTCTFCRREFRSAQALGGHMNVH 106 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.94E-6 | 81 | 111 | No hit | No description |
PROSITE profile | PS50157 | 11.157 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0066 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.0E-5 | 84 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MSAELGILSL TQLQKLAQSQ EQQYQQQSPP QPQLNSRSTT GYWMWNTKQS IPTTAQDDDD 60 SWEVRAFEED TGNAMGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHQAPSLA 120 SNSNHTLPNA NSTLLIPTQE FAANGGLCLL YSLPNPNGHN FNPTLTKSCI NNNSPSTLLS 180 ISPLPTNNLM SPCPPPPNLN FPINRPPSIN TSFNISEPSA SITSNDNNNH DYGSNKRDSS 240 AIEDEIDLEL RLGW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 6e-13 | 79 | 106 | 2 | 29 | superman protein |
2l1o_A | 6e-13 | 79 | 106 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 5e-63 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554111.1 | 1e-121 | PREDICTED: zinc finger protein JAGGED | ||||
TrEMBL | A0A1U8F631 | 1e-119 | A0A1U8F631_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3AFF7 | 1e-119 | A0A2G3AFF7_CAPAN; zinc finger protein JAGGED | ||||
STRING | XP_009589081.1 | 1e-106 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5953 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17810.1 | 9e-38 | C2H2 family protein |