PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00344g01114.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 368aa MW: 40266.7 Da PI: 8.8642 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2e-11 | 11 | 36 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Peaxi162Scf00344g01114.1 11 GEPDCSYYIRTGLCRFGSTCRFNHPP 36 6899********************97 PP | |||||||
2 | zf-CCCH | 39.5 | 9.2e-13 | 57 | 81 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Peaxi162Scf00344g01114.1 57 QPECQYYLKTGTCKFGATCKFHHPK 81 799********************96 PP | |||||||
3 | zf-CCCH | 38 | 2.7e-12 | 92 | 115 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ Peaxi162Scf00344g01114.1 92 TECAYYMRTGQCKFGSTCKFHHPQ 115 58********************97 PP | |||||||
4 | zf-CCCH | 38.2 | 2.4e-12 | 228 | 254 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Peaxi162Scf00344g01114.1 228 PGQPECQFYMKTGDCKFGAVCRFHHPR 254 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.4 | 4.7e-13 | 274 | 300 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Peaxi162Scf00344g01114.1 274 PGEPLCIFYSRYGICKFGPSCKFDHPM 300 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.2E-5 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 11 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 14 | 37 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 15 | 35 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-10 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 58 | 83 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-5 | 60 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.756 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-5 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-10 | 92 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-5 | 94 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 227 | 255 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 227 | 254 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-9 | 229 | 254 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 231 | 257 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 233 | 257 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-10 | 275 | 300 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 276 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-4 | 278 | 298 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MESGHYPVRE GEPDCSYYIR TGLCRFGSTC RFNHPPNRKL AIATARMKGE YPERIGQPEC 60 QYYLKTGTCK FGATCKFHHP KDKAGIAGRN ETECAYYMRT GQCKFGSTCK FHHPQPSNMM 120 VSLRGSPVYP PVPSATTPGQ LSYPLSRGSF IPGARWQGPS SYTPLIVPQG VVSVPGFAYS 180 GQLGSVSSPE GQQQTSGNGQ VYGTARSSDT ATMGYYALQR ENVFPERPGQ PECQFYMKTG 240 DCKFGAVCRF HHPRERLIPP PDCLLSPIGL PLRPGEPLCI FYSRYGICKF GPSCKFDHPM 300 TVFTYSVSAS SSAEAPTVQR LLGSSSGTSA LTLTSEGLVE AVSTKPRRLS LSETRKMPPG 360 DNNIDREG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014160 | 1e-178 | BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019235081.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1J6KXF7 | 0.0 | A0A1J6KXF7_NICAT; Zinc finger ccch domain-containing protein zfn-like protein | ||||
STRING | Solyc11g008900.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5289 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-159 | zinc finger protein 1 |