PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00300g00029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 241aa MW: 27925.3 Da PI: 9.3801 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33 | 2e-10 | 52 | 127 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 Yn+Y GF vrk +++++k+++ + + tf+ + + + +r+r e r+gC a+++ k + +g wev++l eHn Peaxi162Scf00300g00029.1 52 AYNSYVVAKGFGVRKGAKTYNKNQELTRTITFYSNYQER-----------KRQRLEYRCGCLARIRFKIS-NGMWEVIELCDEHN 124 5********************999988888887655433...........3567788***********99.************** PP FAR1 87 Hel 89 H + Peaxi162Scf00300g00029.1 125 HLM 127 *76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-7 | 52 | 127 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MGDSLVDNDD FDNEVHNDGQ RSSTVQNVSD INNDFTLKIV MKFNSEDESY EAYNSYVVAK 60 GFGVRKGAKT YNKNQELTRT ITFYSNYQER KRQRLEYRCG CLARIRFKIS NGMWEVIELC 120 DEHNHLMIEE NLRHFIRKLT DSTKAANDVE SEEISRKHLY QAKVEITKLQ GELYAEASHK 180 SCSNSRIYVG PSSGVNDQVL DPFKKKGKGN GYGRLKPRSE QRKKRAPHKM LKARAIEQQQ 240 Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 224 | KKKGKGNGYGRLKPRSEQRKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016467903.1 | 7e-56 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_019266793.1 | 7e-56 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A1S3ZUA7 | 2e-54 | A0A1S3ZUA7_TOBAC; Uncharacterized protein | ||||
STRING | XP_009771804.1 | 4e-55 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1726 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 3e-08 | FAR1-related sequence 10 |