PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00258g00314.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 663aa    MW: 73120.2 Da    PI: 10.1062
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00258g00314.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.2e-101870348
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                              +W t+E++ll+ av+++G+++W+++a +++       k +++ +ck+++++++
  Peaxi162Scf00258g00314.1 18 KWGTWEELLLAFAVNRYGTKSWDSVAVELQkrstapaKLLSAPNCKLKYLDLK 70
                              7************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001670.002151870No hitNo description
PfamPF002494.3E-81869IPR001005SANT/Myb domain
SuperFamilySSF473703.27E-16270388IPR001487Bromodomain
SMARTSM002972.6E-13278387IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-14283389IPR001487Bromodomain
PfamPF004391.7E-10292372IPR001487Bromodomain
CDDcd043694.94E-12292382No hitNo description
PROSITE profilePS5001411.671297368IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MAKPDGTVKN SSEEEEAKWG TWEELLLAFA VNRYGTKSWD SVAVELQKRS TAPAKLLSAP  60
NCKLKYLDLK RRYVNDDDEE KTEALLEELR KLRVAELKRE VEKYDLSIVL LLFRSLQLKK  120
KQLEEERAEN GGYNSDLAKK IESEIKPEQK SSPELDAAGD ESEEASESSS TGPKQSCSIR  180
TGTEDNEKKP ESVRTGSVKE EPVGTGSVKE EPDKCREEKP VREDSYNGSS DSVEKPVKVE  240
PVSDSDVQSS ISKRVNDKVL RGCSSGDERE KEDNRSPTAK EIPVEYQPLI AFLDKITNHK  300
LGSIFARRLE SQETEMYSNL VRQHVDLETV RTWLENGRYL SCKSKFFRDL LLLASNAIVF  360
FKKSSQEFVA ATELRQLILK EIPQTKSKSD SSPGKQTSLK PASLAKKEIA KPPDSLLLKT  420
NISRSMIVCR KRSSIASKAS ASASGGGDKM REQTITLPGE NVVVDALQQP TQLATNDGEN  480
RITKKRRQDR SASASASLKK NEKSRSNSTS IKTSAAVVDR NQGKGESSSQ HQQSKVDNRK  540
ELSNTDVKKR SAANFLNRMK QSSSSNSGLL LDALKSTPLS SDSKGGLVQK KKDGGTGGGR  600
KELAASKNLE AKQGKEKGSP MKKNIGRPPK RGADPSPTSG KQSREGAESA AVAPKQPKKR  660
TRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760270.10.0PREDICTED: uncharacterized protein LOC104212640
TrEMBLA0A1U7VEL20.0A0A1U7VEL2_NICSY; uncharacterized protein LOC104212640
STRINGXP_009760270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-65DNA-binding bromodomain-containing protein