PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00249g00025.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 504aa MW: 57697.8 Da PI: 9.9085

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00249g00025.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.5	3.4e-26	48	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+ + ks+++++i+ ++fvCskeg+r++++ k ++r++ tr gCk l v+k++d+kw v +l+++H Peaxi162Scf00249g00025.1 48 NFYLDYAHRNGFSVRRGRVAKSRKDKSIIGQEFVCSKEGFRSKKNLK---SNRPQDITREGCKVLLYVSKKEDAKWAVCRLVSNH 129 6***************************************98877...999**************************** PP FAR1 86 nHela 90 nHela Peaxi162Scf00249g00025.1 130 NHELA 134 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-23	48	134	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	11.251	252	288	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.4E-8	252	286	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-5	263	290	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MENSNIDEQN EIGSDMDGTT PFVPSSGVEN HKDLYIGMEF SSLDDSFNFY LDYAHRNGFS 60 VRRGRVAKSR KDKSIIGQEF VCSKEGFRSK KNLKSNRPQD ITREGCKVLL YVSKKEDAKW 120 AVCRLVSNHN HELATPNSQR FLRSKRKKSE AQKNLIDLLD DSGVRPGKIA SAIDARYDKI 180 HEKDFKTKSS MPKLKTLYPM ENEAAKAYTR KVFNIFQEEL LLSQKFVSEK VEVKDGINIY 240 KVHEFGRKTP TYIVSLDLAS KSATCSCHKF EFMGILCRHV LMVFINKQIH SLPSCYLLDR 300 WTRNATREKV DDATNETKKL KPALLFNNIM MQSIGVSERA TRSGKHYQLA HQRLLQLCEE 360 LDELPYEFEK DCVEGNQVSE SNLELNSCEK SHRITLVDPP RAATKGRPRS LRMKGALESK 420 TKKNPSQRQK GETKNTKPKS KEKSLNHFHN FTTDKLRTQV LHIPTHSRVL SIYTSSGFNE 480 SSFKSVPTKP PSVMGNKIED LELQ

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MENSNIDEQN EIGSDMDGTT PFVPSSGVEN HKDLYIGMEF SSLDDSFNFY LDYAHRNGFS  60
VRRGRVAKSR KDKSIIGQEF VCSKEGFRSK KNLKSNRPQD ITREGCKVLL YVSKKEDAKW  120
AVCRLVSNHN HELATPNSQR FLRSKRKKSE AQKNLIDLLD DSGVRPGKIA SAIDARYDKI  180
HEKDFKTKSS MPKLKTLYPM ENEAAKAYTR KVFNIFQEEL LLSQKFVSEK VEVKDGINIY  240
KVHEFGRKTP TYIVSLDLAS KSATCSCHKF EFMGILCRHV LMVFINKQIH SLPSCYLLDR  300
WTRNATREKV DDATNETKKL KPALLFNNIM MQSIGVSERA TRSGKHYQLA HQRLLQLCEE  360
LDELPYEFEK DCVEGNQVSE SNLELNSCEK SHRITLVDPP RAATKGRPRS LRMKGALESK  420
TKKNPSQRQK GETKNTKPKS KEKSLNHFHN FTTDKLRTQV LHIPTHSRVL SIYTSSGFNE  480
SSFKSVPTKP PSVMGNKIED LELQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	1e-112	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	1e-109	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G3CXF4	1e-167	A0A2G3CXF4_CAPCH; Uncharacterized protein
STRING	Solyc01g110070.1.1	1e-109	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-28	FAR1-related sequence 3