PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00229g01010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 23650.3 Da PI: 6.5073 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.7 | 3.7e-31 | 36 | 94 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s+ gCp++k+vers++dp+++ itY+++Hnh+ Peaxi162Scf00229g01010.1 36 SDSWSWRKYGQKPIKGSPYPRGYYKCSSSkGCPARKQVERSHHDPTMLLITYSSDHNHT 94 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-32 | 27 | 96 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.812 | 30 | 96 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-27 | 31 | 96 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-35 | 35 | 95 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-26 | 37 | 93 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MPSPKKSRKG IKKRAISVPI SECDGSRSKG EVYPPSDSWS WRKYGQKPIK GSPYPRGYYK 60 CSSSKGCPAR KQVERSHHDP TMLLITYSSD HNHTLPPAAS KHRHPTTPTS IPTTTPASTD 120 TNNSPAATPE DEVAVFTYQP NNDFPEIPEE LGWFSDVGST LMESTSLVGS TWIDNDAAVM 180 LPIGEEDKSL FGDLGELPEC SVVFRRYSVD SPCTD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-21 | 36 | 98 | 15 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593761.1 | 9e-96 | PREDICTED: probable WRKY transcription factor 65 isoform X1 | ||||
Swissprot | Q9LP56 | 2e-63 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | M1BTR1 | 8e-94 | M1BTR1_SOLTU; Uncharacterized protein | ||||
STRING | XP_009593761.1 | 3e-95 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7468 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 8e-65 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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