PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00216g00121.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 318aa    MW: 35523 Da    PI: 7.1307
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00216g00121.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13122168455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h  +Er+RR+++ +++  L  l+P +     kKl+Ka++L  A++YIk+L+
  Peaxi162Scf00216g00121.1 122 GHVLAERKRRQQLSQRIIALSALIPDL-----KKLDKASVLGDAIKYIKQLK 168
                               58899**********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.574118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-11122167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.62E-12123172No hitNo description
Gene3DG3DSA:4.10.280.109.2E-16123181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-15123181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-14124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDTSSSKWST DMAAGILEEN LAVFFSTPRM ETQQNSSNFS SPPNVISFSN SPIATTAAPK  60
YFENLNASVK SEVPSSRTTI NFSSSAISIY SDFEDSQHTI QELGFDTQKK SCSIRTGLQA  120
QGHVLAERKR RQQLSQRIIA LSALIPDLKK LDKASVLGDA IKYIKQLKER VKTLEEKSKK  180
CSNKEPVVTV KRARLLSNYD DSIFSDENSN ISTERSSFPD IEVRASAENV LINIYCNKQS  240
ARIKEIFSQV ENLNLNIISS SAMPIGDNIT NITIIAQMDY QWSMTAQHDA NRIHGAIMKL  300
ISGQEEAALL HHKEFQDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-11123193979Transcription factor MYC2
5gnj_B1e-11123193979Transcription factor MYC2
5gnj_E1e-11123193979Transcription factor MYC2
5gnj_F1e-11123193979Transcription factor MYC2
5gnj_G1e-11123193979Transcription factor MYC2
5gnj_I1e-11123193979Transcription factor MYC2
5gnj_M1e-11123193979Transcription factor MYC2
5gnj_N1e-11123193979Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605673.16e-95PREDICTED: transcription factor bHLH18
RefseqXP_009605674.16e-95PREDICTED: transcription factor bHLH18
TrEMBLA0A1U8G0M35e-93A0A1U8G0M3_CAPAN; transcription factor bHLH18-like
STRINGXP_009605673.12e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-41bHLH family protein