PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00166g00065.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 447aa    MW: 49599.8 Da    PI: 5.1141
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00166g00065.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000557797323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C+ Cgk F +   L  H +tH
  Peaxi162Scf00166g00065.1 77 CKECGKEFGSMRALAGHVKTH 97
                              ********************9 PP
2zf-C2H214.97.7e-05106128123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C++C+k F +   L  H+++H
  Peaxi162Scf00166g00065.1 106 YVCEKCDKGFGSIRALFGHMKVH 128
                               9********************99 PP
3zf-C2H211.80.00074360382123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp+C k+F++  +L  H r H
  Peaxi162Scf00166g00065.1 360 HECPICFKVFPSGQSLGGHKRAH 382
                               79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.187597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.49275102IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-976128No hitNo description
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-47798IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-47799IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-4103129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.157106133IPR007087Zinc finger, C2H2
PfamPF139122.2E-5106130IPR007087Zinc finger, C2H2
SMARTSM003558.5E-4106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576676.36E-5356384No hitNo description
PfamPF139124.8E-11359383IPR007087Zinc finger, C2H2
SMARTSM003550.2360382IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141360382IPR007087Zinc finger, C2H2
PROSITE patternPS000280362382IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MRVHLALIQA LKKQKYKAVC KMDSDEFESS LKDQEKANNG ISNGDNDDGE LNGYGLRDNP  60
RKSWRVTDIT GCSLNLCKEC GKEFGSMRAL AGHVKTHSKK CSGKSYVCEK CDKGFGSIRA  120
LFGHMKVHSK RSRVVEDDQD CETKQVLSDF ETVCPIRKKR SKIRYNIDAN CTSFSSLNNE  180
SVSAVSELDE MEEAAKCLMM LSLGVREWDE YVLASEYFKN ENAILESESF HCAKGISEKI  240
GGSDSDSDSA DSYEKNCDEG VSVDELFTVN DEFSNKLMLI NTENDPSSSV VMEDIAFLDS  300
CSYKNAAGVD FHGLICDTTG HKTLVNSETL LADMVNSQLE CIDDSPVELI RPKPIKSKRH  360
ECPICFKVFP SGQSLGGHKR AHYTGFIEGK TKEAVVKKLE DLADNHKGFD LNNPVNVVDE  420
GGDKDVVELK LWWVGSDQGA KALMMTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064902.11e-158zinc finger protein ZAT1-like
TrEMBLA0A1S3Y1J71e-153A0A1S3Y1J7_TOBAC; zinc finger protein ZAT9-like
TrEMBLA0A1U7UN661e-153A0A1U7UN66_NICSY; zinc finger protein ZAT1-like
TrEMBLA0A314KUK41e-153A0A314KUK4_NICAT; Uncharacterized protein
TrEMBLA0A3Q7FX211e-153A0A3Q7FX21_SOLLC; Uncharacterized protein
STRINGSolyc02g088670.1.11e-154(Solanum lycopersicum)
STRINGXP_009757607.11e-154(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.12e-15C2H2-like zinc finger protein