PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00160g01038.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB_related

Protein Properties

Length: 542aa MW: 56934 Da PI: 6.7431

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00160g01038.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	173	217	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 r++W+t Ed l+ av++ G g+W+ I + Rt+ q+ rw Peaxi162Scf00160g01038.1 173 RKPWSTAEDMELIAAVQKCGEGNWANIVKgdFK-GDRTPSQLSQRW 217 789**********************99652133.477777777777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.402	168	225	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-12	169	221	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.02E-12	170	223	IPR009057	Homeodomain-like
SMART	SM00717	9.6E-9	172	223	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-6	173	217	IPR001005	SANT/Myb domain
CDD	cd11660	7.64E-14	174	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
TTVLGVLQEV AGQVITDVKI DWNALVKKTT TGITNAREYQ MLWRHLAYRH GLLDGFDDGA 60 QPLDDDSDLE YELEASPAVS NEASAEAAAC VKVLIASGAS SDANMVNGST VEAPLTINVP 120 NGQTSGTGPE NSSHGTSMHG TNITVPVAVP TMAAEGLDTH GPATTTLPAR RKRKPWSTAE 180 DMELIAAVQK CGEGNWANIV KGDFKGDRTP SQLSQRWAII RKRKGTMVGN GSQLSEAQLA 240 ARRAMSLALN MPMGDKLKAA CPIGAGAPKR PSPKPATSPD SMVKAAAVAA GARIATPSGA 300 VSLLKAAQSK PALCNIPGGG PAVKPPILGN TNGLPSNVHF IRTGLVSRST GPSNASRLGT 360 QQVLGHPPKP ALPAVQPNSV DTPSRSNTSA EPDHPTCPQV AELEVNTKQE LLQKNQAVAL 420 SNVQKDKPVG DLDASGDNPL PPQVQQHRPT ASGNPLIKKV EDQTFVLDDV PKEHRQEDQD 480 SHNANAPSVQ VQKKVIDLPS QEIASNYTND ASIAPARPEK ESAEEGDPSK APARIELIFI 540 QS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

TTVLGVLQEV AGQVITDVKI DWNALVKKTT TGITNAREYQ MLWRHLAYRH GLLDGFDDGA  60
QPLDDDSDLE YELEASPAVS NEASAEAAAC VKVLIASGAS SDANMVNGST VEAPLTINVP  120
NGQTSGTGPE NSSHGTSMHG TNITVPVAVP TMAAEGLDTH GPATTTLPAR RKRKPWSTAE  180
DMELIAAVQK CGEGNWANIV KGDFKGDRTP SQLSQRWAII RKRKGTMVGN GSQLSEAQLA  240
ARRAMSLALN MPMGDKLKAA CPIGAGAPKR PSPKPATSPD SMVKAAAVAA GARIATPSGA  300
VSLLKAAQSK PALCNIPGGG PAVKPPILGN TNGLPSNVHF IRTGLVSRST GPSNASRLGT  360
QQVLGHPPKP ALPAVQPNSV DTPSRSNTSA EPDHPTCPQV AELEVNTKQE LLQKNQAVAL  420
SNVQKDKPVG DLDASGDNPL PPQVQQHRPT ASGNPLIKKV EDQTFVLDDV PKEHRQEDQD  480
SHNANAPSVQ VQKKVIDLPS QEIASNYTND ASIAPARPEK ESAEEGDPSK APARIELIFI  540
QS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597578.1	0.0	PREDICTED: uncharacterized protein LOC104093530
TrEMBL	A0A1J6KKI0	0.0	A0A1J6KKI0_NICAT; Uncharacterized protein
TrEMBL	A0A1U7WZM0	0.0	A0A1U7WZM0_NICSY; uncharacterized protein LOC104232506
STRING	XP_009597578.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3434	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-66	MYB_related family protein