PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00111g00122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | WRKY | ||||||||
Protein Properties | Length: 306aa MW: 34561 Da PI: 6.8462 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.7 | 2.4e-33 | 165 | 222 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers +dp+vv++tYeg+Hnh+ Peaxi162Scf00111g00122.1 165 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCSVKKRVERSYQDPSVVITTYEGQHNHH 222 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-34 | 149 | 224 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-29 | 156 | 224 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.019 | 159 | 224 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-38 | 164 | 223 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 165 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MSDNNPFYHD YMGTNNAFPF FGDQNPSSIY DPNIQNNHHQ DFDPSSYMTL TECLQGSMDY 60 NSLSNAFGMS GSSSEVVCPP LDQESSRKNS GDNPLTPNSL VSSSSSEAGG EEDSSKSKKD 120 LQAKDQCEDE EDKSKKVSKA KKKGEKKQKE PRFAFMTKSE IDNLEDGYRW RKYGQKAVKN 180 SPFPRSYYRC TSQKCSVKKR VERSYQDPSV VITTYEGQHN HHCPATLRGN AAAAIFSPSF 240 LSSSQLIPNF PQELVSQMLI TNTNNQNLPI NSAYNYYHQQ HQPHLAPDQY GLFQDVVTSL 300 MHKREP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 157 | 225 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 157 | 225 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776873.1 | 1e-160 | PREDICTED: probable WRKY transcription factor 71 | ||||
Refseq | XP_016455219.1 | 1e-160 | PREDICTED: probable WRKY transcription factor 71 | ||||
TrEMBL | A0A1S3YSL8 | 1e-158 | A0A1S3YSL8_TOBAC; probable WRKY transcription factor 71 | ||||
TrEMBL | A0A1U7WDY3 | 1e-158 | A0A1U7WDY3_NICSY; probable WRKY transcription factor 71 | ||||
STRING | XP_009776873.1 | 1e-159 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 8e-53 | WRKY DNA-binding protein 28 |