PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00102g00116.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ARR-B

Protein Properties

Length: 666aa MW: 73316.5 Da PI: 6.1014

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00102g00116.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.6	3.2e-29	207	260	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Peaxi162Scf00102g00116.1 207 KPRVVWSVELHQQFVQAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 260 79*****************.******************************8 PP
2	Response_reg	78.2	2.9e-26	27	135	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 vl+vdD+p+ +++l+++l++ +y ev+++ +e al ll+e++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a + + Peaxi162Scf00102g00116.1 27 VLVVDDDPTCLRILEKMLRNCHY-EVTTCNRAEIALSLLRENKngFDVVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDGK 109 89*******************.***********999999******************6644.8******** PP HHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 84 edalealkaGakdflsKpfdpeelvk 109 + + + + Ga d+l Kp+ +e+l + Peaxi162Scf00102g00116.1 110 DVVMKGVTHGACDYLIKPVRMEALKN 135 *******************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	6.7E-184	7	656	IPR017053	Response regulator B-type, plant
SuperFamily	SSF52172	1.99E-36	24	147	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	2.5E-43	24	148	No hit	No description
SMART	SM00448	8.4E-32	25	137	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	43.551	26	141	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.4E-23	27	135	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	2.30E-28	28	140	No hit	No description
SuperFamily	SSF46689	1.18E-20	204	264	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.351	204	263	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-30	206	265	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-25	207	260	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-8	209	259	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0009414	Biological Process	response to water deprivation
GO:0010082	Biological Process	regulation of root meristem growth
GO:0010380	Biological Process	regulation of chlorophyll biosynthetic process
GO:0031537	Biological Process	regulation of anthocyanin metabolic process
GO:0048367	Biological Process	shoot system development
GO:0080022	Biological Process	primary root development
GO:0080036	Biological Process	regulation of cytokinin-activated signaling pathway
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MNLVASSSVS WKSNDKVSDQ FPAGLRVLVV DDDPTCLRIL EKMLRNCHYE VTTCNRAEIA 60 LSLLRENKNG FDVVISDVHM PDMDGFKLLE HVGLEMDLPV IMMSADDGKD VVMKGVTHGA 120 CDYLIKPVRM EALKNIWQHV VRKKKHEWKD KDCDQSASIE DGDRQQKPPE DVDYSSSAND 180 GNWKSSKKRK EEEDEADERD ETSTLKKPRV VWSVELHQQF VQAVNQLGID KAVPKKILEL 240 MNVPGLTREN VASHLQKYRL YLRRLQHPNG LNNSFMGHPD AAYGTMSSFN GLELQALAAS 300 GQLPAQSLAT LQAAALGRSA TKSAISMPLV DQRNLFSFEN PKLRFSEGQQ LNNSNKQINL 360 LHGIPTTMEP KQLADLHQSS QSFVAMNMQG NSRVQQNSSL LMQMSQQPSR AQMLNETNNG 420 SQVPRPPLSM SQPLPSNGIP GAVLSRSGIV DNVRGTVYSP VSQASSMVDF SLNQNAEFQN 480 NSFPLVSSNS GMSALTSKGM LQEEVNSDIK GSRGFPPGYN IFGELHPQKS QDWGLPNVGS 540 TFDASHHSSM PGTLNVSPSV LVQQGISSTK KSAQNGNSPI SKVVFSSREE SGNVNPMGGL 600 QINTLGGNLL PVKSEQFHDA SYQNTFFPEQ FGQDDLMSAL LKQQESVGPV ETEFGFDGYP 660 LDNLPV

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MNLVASSSVS WKSNDKVSDQ FPAGLRVLVV DDDPTCLRIL EKMLRNCHYE VTTCNRAEIA  60
LSLLRENKNG FDVVISDVHM PDMDGFKLLE HVGLEMDLPV IMMSADDGKD VVMKGVTHGA  120
CDYLIKPVRM EALKNIWQHV VRKKKHEWKD KDCDQSASIE DGDRQQKPPE DVDYSSSAND  180
GNWKSSKKRK EEEDEADERD ETSTLKKPRV VWSVELHQQF VQAVNQLGID KAVPKKILEL  240
MNVPGLTREN VASHLQKYRL YLRRLQHPNG LNNSFMGHPD AAYGTMSSFN GLELQALAAS  300
GQLPAQSLAT LQAAALGRSA TKSAISMPLV DQRNLFSFEN PKLRFSEGQQ LNNSNKQINL  360
LHGIPTTMEP KQLADLHQSS QSFVAMNMQG NSRVQQNSSL LMQMSQQPSR AQMLNETNNG  420
SQVPRPPLSM SQPLPSNGIP GAVLSRSGIV DNVRGTVYSP VSQASSMVDF SLNQNAEFQN  480
NSFPLVSSNS GMSALTSKGM LQEEVNSDIK GSRGFPPGYN IFGELHPQKS QDWGLPNVGS  540
TFDASHHSSM PGTLNVSPSV LVQQGISSTK KSAQNGNSPI SKVVFSSREE SGNVNPMGGL  600
QINTLGGNLL PVKSEQFHDA SYQNTFFPEQ FGQDDLMSAL LKQQESVGPV ETEFGFDGYP  660
LDNLPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	1e-20	206	265	4	63	ARR10-B
5lxu_A	8e-21	207	263	1	57	Transcription factor LUX
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269\|PubMed:11574878, ECO:0000269\|PubMed:11691951, ECO:0000269\|PubMed:17363254, ECO:0000269\|PubMed:19039136}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000269\|PubMed:20605455}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF412542	0.0	JF412542.1 Nicotiana tabacum RRB2 type-b response regulator mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615647.1	0.0	PREDICTED: two-component response regulator ARR2-like
Swissprot	Q940D0	0.0	ARR1_ARATH; Two-component response regulator ARR1
TrEMBL	A0A0A1WC27	0.0	A0A0A1WC27_NICAT; Two-component response regulator
STRING	XP_009615647.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3191	24	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.2	1e-159	response regulator 1

Publications ? help Back to Top
Bürkle L,Meyer S,Dortay H,Lehrach H,Heyl A In vitro recombination cloning of entire cDNA libraries in Arabidopsis thaliana and its application to the yeast two-hybrid system. Funct. Integr. Genomics, 2005. 5(3): p. 175-83 [PMID:15714319] Moubayidin L, et al. Spatial coordination between stem cell activity and cell differentiation in the root meristem. Dev. Cell, 2013. 26(4): p. 405-15 [PMID:23987513] Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Kurepa J,Li Y,Perry SE,Smalle JA Ectopic expression of the phosphomimic mutant version of Arabidopsis response regulator 1 promotes a constitutive cytokinin response phenotype. BMC Plant Biol., 2014. 14: p. 28 [PMID:24423196] Cortleven A, et al. A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase2 and Arabidopsis histidine kinase3 receptors. Plant Physiol., 2014. 164(3): p. 1470-83 [PMID:24424319] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] D'Alessandro S,Golin S,Hardtke CS,Lo Schiavo F,Zottini M The co-chaperone p23 controls root development through the modulation of auxin distribution in the Arabidopsis root meristem. J. Exp. Bot., 2015. 66(16): p. 5113-22 [PMID:26163704] Jiang L, et al. Strigolactones spatially influence lateral root development through the cytokinin signaling network. J. Exp. Bot., 2016. 67(1): p. 379-89 [PMID:26519957] Moubayidin L, et al. A SCARECROW-based regulatory circuit controls Arabidopsis thaliana meristem size from the root endodermis. Planta, 2016. 243(5): p. 1159-68 [PMID:26848984] Muraro D, et al. A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana. J. Theor. Biol., 2016. 404: p. 182-205 [PMID:27157127] Cortleven A, et al. Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes. Plant Physiol., 2016. 172(1): p. 464-78 [PMID:27388681] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Kushwah S,Laxmi A The interaction between glucose and cytokinin signaling in controlling Arabidopsis thaliana seedling root growth and development. Plant Signal Behav, 2017. 12(5): p. e1312241 [PMID:28467152] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Kobayashi K,Iwase A Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal. Plant Signal Behav, 2017. 12(6): p. e1338999 [PMID:28594268] Liu B,De Storme N,Geelen D Cold interferes with male meiotic cytokinesis in Arabidopsis thaliana independently of the AHK2/3-AHP2/3/5 cytokinin signaling module. Cell Biol. Int., 2017. 41(8): p. 879-889 [PMID:28618065] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Yan Z, et al. Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1. Plant Physiol., 2017. 175(3): p. 1438-1454 [PMID:28931628] Rong XF, et al. Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis. Plant Cell Physiol., 2018. 59(4): p. 756-764 [PMID:29186581] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938] Waldie T,Leyser O Cytokinin Targets Auxin Transport to Promote Shoot Branching. Plant Physiol., 2018. 177(2): p. 803-818 [PMID:29717021]