PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00091g00074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | NAC | ||||||||
Protein Properties | Length: 492aa MW: 54938.4 Da PI: 7.8133 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.1 | 8.6e-50 | 33 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 + pGfrF+Ptdeel+++yLkkk+eg++ + evi+ev+i k+ePwdLp k+v ++++ew+fFs+r +ky++g++++rat++gyWk Peaxi162Scf00091g00074.1 33 MFPGFRFSPTDEELISYYLKKKLEGSDKCV-EVISEVEIWKHEPWDLPaKSVIQSDNEWFFFSPRGRKYPNGSQSKRATETGYWK 116 579************************777.99***************667777899**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgk+++v+s +++ +g+k+tLvf++grapkg++t+W+mhey + Peaxi162Scf00091g00074.1 117 ATGKERNVKS-GSNIIGTKRTLVFHTGRAPKGQRTQWIMHEYCM 159 **********.99*****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-56 | 29 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.381 | 33 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-26 | 35 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MEDGHVRNEN GRGKSPRNNN SNVEISIATA SSMFPGFRFS PTDEELISYY LKKKLEGSDK 60 CVEVISEVEI WKHEPWDLPA KSVIQSDNEW FFFSPRGRKY PNGSQSKRAT ETGYWKATGK 120 ERNVKSGSNI IGTKRTLVFH TGRAPKGQRT QWIMHEYCMS GNTNHQDSMV VCRLRKNSEF 180 HLNDTPRNRR NQLVATDSTT AMSGAGQLGS LELVTGGDCC SKEGSSSFHS HSVEQIDSES 240 ESDNPTKEFS QHDSSSHFKD CDGEEDCFAD IMKDDIIKLD DSSFNAGPVS MVSSGPESSN 300 ISTREAQVKL SNAVPFQGTA NRRLRLVIEK VVEYRVEGSK VHAATKKNKI GTSTTGSASW 360 LRNTGCGILL WNQDINCVQG NTSMNYRKES SHPKLDLKLN LSPPRETIFP RGEISPSRSS 420 SSPTSSCISR EPTPEEQLFG YPNSQTETTS MMLVGCPRCL MYVMLSVEDP KCPKCKSSML 480 LDFFHEDRIK KK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-43 | 29 | 176 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-43 | 29 | 176 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-43 | 29 | 176 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-43 | 29 | 176 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-43 | 29 | 176 | 16 | 167 | NAC domain-containing protein 19 |
3swm_B | 3e-43 | 29 | 176 | 16 | 167 | NAC domain-containing protein 19 |
3swm_C | 3e-43 | 29 | 176 | 16 | 167 | NAC domain-containing protein 19 |
3swm_D | 3e-43 | 29 | 176 | 16 | 167 | NAC domain-containing protein 19 |
3swp_A | 3e-43 | 29 | 176 | 16 | 167 | NAC domain-containing protein 19 |
3swp_B | 3e-43 | 29 | 176 | 16 | 167 | NAC domain-containing protein 19 |
3swp_C | 3e-43 | 29 | 176 | 16 | 167 | NAC domain-containing protein 19 |
3swp_D | 3e-43 | 29 | 176 | 16 | 167 | NAC domain-containing protein 19 |
4dul_A | 2e-43 | 29 | 176 | 13 | 164 | NAC domain-containing protein 19 |
4dul_B | 2e-43 | 29 | 176 | 13 | 164 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-105 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019232292.1 | 0.0 | PREDICTED: NAC domain-containing protein 89-like | ||||
Swissprot | Q9XIN7 | 2e-84 | NAC40_ARATH; NAC domain-containing protein 40 | ||||
TrEMBL | A0A1J6LAW0 | 0.0 | A0A1J6LAW0_NICAT; Nac domain-containing protein 89 | ||||
STRING | PGSC0003DMT400015077 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4154 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 4e-78 | NTM1-like 8 |
Publications ? help Back to Top | |||
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