PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00074g01735.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | WRKY | ||||||||
Protein Properties | Length: 184aa MW: 20993 Da PI: 7.8817 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 52.3 | 1.1e-16 | 126 | 163 | 22 | 59 |
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +sYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+ Peaxi162Scf00074g01735.1 126 KSYYRCTHHTCNVKKQIQRHSKDTSIVVTTYEGIHNHP 163 79***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 8.24E-14 | 115 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-12 | 121 | 164 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-12 | 126 | 163 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-13 | 126 | 163 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.468 | 126 | 165 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MDAGEEPPPP PPPPLPPPPL LSNDLSPASF FMQPMNNNSQ VIGCDNNIDW TALLSGSINN 60 CHEQTMMPNV SITPRNITMM EGEQQHQQHG IISCRDKGKI RKRKYVPPRI AFHTRSTEDI 120 LDDGFKSYYR CTHHTCNVKK QIQRHSKDTS IVVTTYEGIH NHPCEKLMET LSPFLKQLQF 180 LSRF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 2e-55 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016496500.1 | 1e-77 | PREDICTED: probable WRKY transcription factor 45 | ||||
TrEMBL | A0A1S4C5P0 | 3e-76 | A0A1S4C5P0_TOBAC; probable WRKY transcription factor 45 | ||||
STRING | XP_009598201.1 | 9e-76 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6374 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 1e-40 | WRKY DNA-binding protein 56 |