PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00062g00421.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 390aa MW: 40508.7 Da PI: 6.5637

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00062g00421.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.1e-12	209	254	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Peaxi162Scf00062g00421.1 209 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 254 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.23E-13	202	258	No hit	No description
SuperFamily	SSF47459	5.89E-17	202	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	204	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-16	206	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-9	209	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MQAMNTFQQQ SQMSLQDLHD SEETSGQQMG HPAHFDPTSS HDDFLQQILS SVPSSSPWPD 60 ISGEGQHNSH HPYNFDDQST LLASKLRQHQ ITGGGAAAAA AKALMLHQQL LHGGGMPPLG 120 LGNGGDQNDD VANPGNDISA LYNGFAGSLG QTSNQSQHFH PGGGTMQAQS FGAPASTMNQ 180 TPAASGGSAG GQPKQQKVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA 240 SMLDEIIDYV KFLQLQVKVL SMSRLGGAAG GGGDRVQGNG APRGTNGTTS SANNDSSMTM 300 TEHQVAKLME EDMGSAMQYL QGKGLCLMPI SLATAISTAT CHSRNPMNTT NNPLLGGGPA 360 TNGGGETGGP SSPSLSASTV QSATMGNGGA

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MQAMNTFQQQ SQMSLQDLHD SEETSGQQMG HPAHFDPTSS HDDFLQQILS SVPSSSPWPD  60
ISGEGQHNSH HPYNFDDQST LLASKLRQHQ ITGGGAAAAA AKALMLHQQL LHGGGMPPLG  120
LGNGGDQNDD VANPGNDISA LYNGFAGSLG QTSNQSQHFH PGGGTMQAQS FGAPASTMNQ  180
TPAASGGSAG GQPKQQKVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA  240
SMLDEIIDYV KFLQLQVKVL SMSRLGGAAG GGGDRVQGNG APRGTNGTTS SANNDSSMTM  300
TEHQVAKLME EDMGSAMQYL QGKGLCLMPI SLATAISTAT CHSRNPMNTT NNPLLGGGPA  360
TNGGGETGGP SSPSLSASTV QSATMGNGGA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	218	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251756.1	1e-174	transcription factor bHLH66 isoform X1
Swissprot	Q9ZUG9	2e-90	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A3Q7J4B1	1e-173	A0A3Q7J4B1_SOLLC; Uncharacterized protein
STRING	Solyc12g010170.1.1	1e-174	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-67	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]