PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00062g00102.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 461aa    MW: 51822.7 Da    PI: 5.0705
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00062g00102.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.11.7e-21126222185
                  trihelix   1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 
                               +Wt++ v++Li+++  ++++ + +g+          +kk++W+ vs+ m + g+++sp+qC++k+++lnkrykk++++ +++ ++
  Peaxi162Scf00062g00102.1 126 KWTDNVVRLLIQVVACVGDDGSlEGSeglkrksgciQKKGKWKTVSRIMLSNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSC 210
                               7**************777777743334566667889**********************************************558 PP

                  trihelix  74 essstcpyfdql 85 
                                ++++ ++ d++
  Peaxi162Scf00062g00102.1 211 AVVENPVLMDSM 222
                               899888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-18124249No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MSSSGMGGGF LSGYNGGFLG MNRLQQPQSN SNNAAHGHPT SHNNVQSPMN TRLGLESDKP  60
IGLMDVKGCM AFGKDKVVGP SNVVNNCNNP INNTSDEDEP SFTEDGNCDN DAVAQGKKGS  120
PWQRMKWTDN VVRLLIQVVA CVGDDGSLEG SEGLKRKSGC IQKKGKWKTV SRIMLSNGCH  180
VSPQQCEDKF NDLNKRYKKL NDILGRGTSC AVVENPVLMD SMPQLSAKAK ETVKKILNSK  240
HLFYREMCAY HNGQKIPDCN ELDFPVHAST GAGQCSKDNH GSQGDEAEEN DESDDDDDES  300
DEEEDNHGDE DARKVGDFDE RMRRVEENGN FLPQTSGNDN LLAEINEFLQ DPTKSKWEQK  360
IWIKKRMLQL EEEKVGIQAE ALELEKRQFK WQRFCRKKDR ELEMERLENE KLILENEHMA  420
LQLKHKELEL DSKKPNISFN SAPLSIDRPL GRDQIDAARY Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768464.10.0PREDICTED: uncharacterized protein LOC104219473
TrEMBLA0A1U7W1F40.0A0A1U7W1F4_NICSY; uncharacterized protein LOC104219473
STRINGXP_009768464.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-70