PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00049g02223.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 296aa    MW: 31456.3 Da    PI: 5.6582
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00049g02223.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09145189554
                               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  Peaxi162Scf00049g02223.1 145 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 189
                               99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-15138199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14142199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-7145189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MANNPSEGPS DDFFDQFLGF PAYNGAETNL AGNDTGAIPP AMMLQLNSGD GSGQFTGLGV  60
GLGGGGGFHG HGGSFPLGLS LEGGKSGFMK MDDGSAVPGR RFRDDVVDSR ASSSGFHGQP  120
MPSMPHPPAI RPRVRARRGQ ATDPHSIAER LRRERIAERI RALQELVPSV NKTDRAVMLD  180
EIVDYVKFLR LQVKVLSMSR LGGAGAVAPL VTDIPISSVE EESSEGGNNQ PAWEKWSSDG  240
TERQVAKLME ENVGAAMQFL QSKALCIMPI SLASAIYHSQ PPDTSSLVKP ESNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-76HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247958.11e-175PREDICTED: transcription factor UNE12
SwissprotO227681e-118UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1J6JEP41e-173A0A1J6JEP4_NICAT; Transcription factor une12
STRINGXP_009607290.11e-172(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.25e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]