PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00047g02018.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 147aa    MW: 16831.2 Da    PI: 8.4844
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00047g02018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.7e-151659245
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              +ie k   + tfskRr  + KKA+EL +LC++++ +ii s+tg+
  Peaxi162Scf00047g02018.1 16 KIEKKDSLYATFSKRRSSLYKKANELITLCNVDIGIIISSPTGN 59
                              6888888999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.722767IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-19766IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-23885IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-12929IPR002100Transcription factor, MADS-box
PfamPF003194.5E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MVSKITQGRK KIPIAKIEKK DSLYATFSKR RSSLYKKANE LITLCNVDIG IIISSPTGNP  60
FSFFHPTVDS VIDRFQNPNM LSESTRLVAV HAQNRVNQLN SRLEEFDTRE DVASAQTLLI  120
NQLMESRQKG WWESIEQFNE EEATIIV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488243.12e-68PREDICTED: agamous-like MADS-box protein AGL29
RefseqXP_018634574.13e-68PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1S4BH926e-67A0A1S4BH92_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009616563.14e-65(Nicotiana tomentosiformis)
STRINGXP_009630258.14e-65(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-26AGAMOUS-like 61