PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00044g00198.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 187aa MW: 21568.5 Da PI: 8.6716 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 93.1 | 2.4e-29 | 19 | 70 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++YkeClkNhA+ +GghavDGCgEfmp+ ge +alkC AC+CHRnFHR+e++++ Peaxi162Scf00044g00198.1 19 YKYKECLKNHAVGIGGHAVDGCGEFMPA-GE----DALKCVACNCHRNFHRKETQTH 70 68*************************9.44....6*****************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.4E-26 | 20 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-19 | 20 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.6E-27 | 20 | 66 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.925 | 21 | 66 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-29 | 111 | 185 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-17 | 115 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.2E-25 | 124 | 181 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MEFGNQEMHD DQKELEMPYK YKECLKNHAV GIGGHAVDGC GEFMPAGEDA LKCVACNCHR 60 NFHRKETQTH HPPCYRNPPF GTYFHHVMPE QRPLALPSTS GGGGGGYIED QEDMQRNPNN 120 SGTKKRFRTK FSQKQKEKML ELAEKLGWRI QRQDEGIVQQ LCNEIGVKRH VFKVWMHNNK 180 YILGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-22 | 123 | 180 | 16 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802158.1 | 2e-99 | PREDICTED: zinc-finger homeodomain protein 2-like isoform X2 | ||||
Refseq | XP_016462880.1 | 2e-99 | PREDICTED: zinc-finger homeodomain protein 2-like isoform X2 | ||||
Swissprot | A2Z259 | 1e-58 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 1e-58 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A1S3ZEH4 | 4e-98 | A0A1S3ZEH4_TOBAC; zinc-finger homeodomain protein 2-like isoform X2 | ||||
TrEMBL | A0A1U7YG84 | 4e-98 | A0A1U7YG84_NICSY; zinc-finger homeodomain protein 2-like isoform X2 | ||||
STRING | XP_009802157.1 | 5e-95 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 9e-61 | homeobox protein 22 |
Publications ? help Back to Top | |||
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