PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00042g00096.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 385aa MW: 42778.7 Da PI: 7.9174

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00042g00096.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.6	5.5e-30	46	145	1	98
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 aCa+Ck++r+kC+++ Cv+ ++fpa+++ kf vhk+FG snv+k +k+l+++ +++a++s ++eA+ +++dPvyG +g ++kl Peaxi162Scf00042g00096.1 46 ACASCKHQRKKCTEGdCVMWRHFPANRMDKFLGVHKVFGISNVTKKIKSLDDDAqQDEAIKSFLWEAKLWQEDPVYGPLGEYKKL 130 7*********9966******************************6655499************************ PP DUF260 84 qqqleqlkaelallk 98 +q+l++lk++ ++ Peaxi162Scf00042g00096.1 131 EQELKELKEQQRNQQ 145 ******9887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.862	45	148	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-30	46	143	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MFLFPKYFFN NYLLCSIFSL ISTGSTIMSN NNNSAAESHE TSNRPACASC KHQRKKCTEG 60 DCVMWRHFPA NRMDKFLGVH KVFGISNVTK KIKSLDDDAQ QDEAIKSFLW EAKLWQEDPV 120 YGPLGEYKKL EQELKELKEQ QRNQQLQIEK LPDVPLPPTP AEPRYLMAAP RAVDSANFLH 180 NQEDYNLLNY TLPNYTTHLQ GLGGESQGTV SGSGGGINGF GFGFPMPIEQ RQNSFFPRPG 240 FQGVAHQATY NTHVQLEQHV CSYNNMNLLG QGARGIRTRK EHNELVTPSS TTRNVRGRGV 300 GPISSTSSNF VNSTGNNAGT MAVRPSSVGR HSETPISLTA YGRNHSNGDL AAVFHDFKKY 360 NNPDLSGEHG QRDLETGDDS TSKGL

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MFLFPKYFFN NYLLCSIFSL ISTGSTIMSN NNNSAAESHE TSNRPACASC KHQRKKCTEG  60
DCVMWRHFPA NRMDKFLGVH KVFGISNVTK KIKSLDDDAQ QDEAIKSFLW EAKLWQEDPV  120
YGPLGEYKKL EQELKELKEQ QRNQQLQIEK LPDVPLPPTP AEPRYLMAAP RAVDSANFLH  180
NQEDYNLLNY TLPNYTTHLQ GLGGESQGTV SGSGGGINGF GFGFPMPIEQ RQNSFFPRPG  240
FQGVAHQATY NTHVQLEQHV CSYNNMNLLG QGARGIRTRK EHNELVTPSS TTRNVRGRGV  300
GPISSTSSNF VNSTGNNAGT MAVRPSSVGR HSETPISLTA YGRNHSNGDL AAVFHDFKKY  360
NNPDLSGEHG QRDLETGDDS TSKGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-16	47	140	12	103	LOB family transfactor Ramosa2.1
5ly0_B	1e-16	47	140	12	103	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769644.1	6e-47	PREDICTED: uncharacterized protein LOC104220462
TrEMBL	A0A1J6ITB1	1e-116	A0A1J6ITB1_NICAT; Lob domain-containing protein 2
STRING	XP_009619683.1	1e-120	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14094	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	2e-18	LOB domain-containing protein 7