PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00030g00910.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C2H2

Protein Properties

Length: 273aa MW: 30725.6 Da PI: 8.6391

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00030g00910.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.2	1.6e-06	115	134	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r nL+ H+ Peaxi162Scf00030g00910.1 115 FSCHICHKTFNRYNNLQMHM 134 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.27E-5	110	137	No hit	No description
PROSITE profile	PS50157	10.388	115	142	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.55	115	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.3E-4	115	134	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	117	137	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	162	194	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	150	199	219	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MASSYFASSS PVDQNHQIEP FDFFADKTQN AFEFLSLSQS SEKETLSNDK ENPNSCNWLN 60 KEDDVTVALH IGLPNFSSGS STNPTDYNKG DGTVAAATQY WIPTPSQILV GFTHFSCHIC 120 HKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPKAMLGIP CYCCEEGCKN NINHPRAKPL 180 KDFRTLQTHY KRKHGTKRFA CRKCGKCLAV KGDWRTHEKN CGKRWLCVCG SDFKHKRSLK 240 DHIASFGEGH GPCPPNSFEG VEVQKAGTYS VYV

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019245243.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-108	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A1J6IGH3	1e-180	A0A1J6IGH3_NICAT; Protein transparent testa 1
STRING	XP_009614226.1	1e-179	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13264	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-110	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]