PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00030g00519.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33278.4 Da    PI: 6.5134
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00030g00519.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18129183256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ +++keq  +Lee F+++++++ +++  L+k+l+L  rqV vWFqNrRa+ k
  Peaxi162Scf00030g00519.1 129 RKKLRLSKEQAAVLEETFKEHNTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTK 183
                               788899***********************************************98 PP
2HD-ZIP_I/II125.62.3e-40129218191
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rlskeq+++LEe+F+e+++L+p++K +l+++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+
  Peaxi162Scf00030g00519.1 129 RKKLRLSKEQAAVLEETFKEHNTLNPKQKLALSKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVN 213
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreel 91 
                               eLr +l
  Peaxi162Scf00030g00519.1 214 ELR-AL 218
                               **9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575119No hitNo description
PfamPF046184.8E-173105IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.2E-17125188IPR009057Homeodomain-like
PROSITE profilePS5007116.925125185IPR001356Homeobox domain
SMARTSM003896.6E-15127189IPR001356Homeobox domain
SuperFamilySSF466895.56E-18128194IPR009057Homeodomain-like
PfamPF000461.0E-15129183IPR001356Homeobox domain
CDDcd000865.85E-15129186No hitNo description
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
PfamPF021835.4E-11185219IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.2E-25185228IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGSEKEDGLA LSLSLGMSCS QIDLKNDLAL STAPPLSLNL LPFVHHHQIS AERNEEARDN  60
VRGEIDMNQP ARIIECDDEL EDDHQVIMVS SPNSTVSSVS GKRSHEREEN EGERATSSLE  120
DDGGDAAARK KLRLSKEQAA VLEETFKEHN TLNPKQKLAL SKQLNLRPRQ VEVWFQNRRA  180
RTKLKQTEVD CEYLRRCCEN LTEENRRLQK EVNELRALKL SPQMYMNMSP PTTLTMCPQC  240
ERVAVSSSSS SAASSSAVTG ASVSRSNHPI GTLHQPPAPL KPWAALLSSK TLDLQRSQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177185RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619639.11e-170PREDICTED: homeobox-leucine zipper protein HAT3-like
RefseqXP_016462220.11e-170PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466021e-83HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A1S3ZCP51e-169A0A1S3ZCP5_TOBAC; homeobox-leucine zipper protein HAT3-like
STRINGXP_009619639.11e-169(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11182485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-77homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]