PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00029g00143.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 201aa    MW: 22409.8 Da    PI: 10.4996
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00029g00143.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.16e-19126159134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++C  tkTplWR+gp g+ktLCnaCG++yr+ +
  Peaxi162Scf00029g00143.1 126 CTHCEITKTPLWREGPLGPKTLCNACGVRYRSGR 159
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.215120156IPR000679Zinc finger, GATA-type
SMARTSM004014.2E-15120170IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15122182No hitNo description
CDDcd002026.71E-14125172No hitNo description
Gene3DG3DSA:3.30.50.102.7E-15125157IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-16126160IPR000679Zinc finger, GATA-type
PROSITE patternPS003440126151IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAALMPIYYS FMSKYFPSNL VLCYQNELSE AQGTVSFQTQ SPVSVLEQSS SCFDGKSISF  60
KSATKRRRSK RAQSSTLSPW LLMAPISCTA VKSKKNSDAK KGKEKKRRNL SQISGAVESI  120
NSVKKCTHCE ITKTPLWREG PLGPKTLCNA CGVRYRSGRL FPEYRPAASP TFVPSLHSNS  180
HRKVTEMRKK AFTELEFCSS G
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774660.11e-78PREDICTED: GATA transcription factor 11-like
RefseqXP_016486021.11e-78PREDICTED: GATA transcription factor 11-like
SwissprotQ6DBP85e-42GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A1S4BB313e-77A0A1S4BB31_TOBAC; GATA transcription factor 11-like
TrEMBLA0A1U7WK813e-77A0A1U7WK81_NICSY; GATA transcription factor 11-like
STRINGXP_009774660.15e-78(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.24e-40GATA transcription factor 11