PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00016g00232.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

SRS

Protein Properties

Length: 201aa MW: 22665.5 Da PI: 8.7543

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00016g00232.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	185.1	2.8e-57	6	148	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 s ++CqdCGn+akkdC++ RCRtCCksrgf+C+thvkstW+p++ rr r++ ++ ++ +++ ++++ ++ + + Peaxi162Scf00016g00232.1 6 SSYSRCQDCGNKAKKDCSFLRCRTCCKSRGFQCQTHVKSTWIPVSTRRPRHHFHHHQQLSTT--------I-QQQQLLQAGPNPK 81 56679******************************************9655544322222........2.2222345666666 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + +++++ e ++P evs +avfrc+rvssvd+ +++aYqt+v+igGhvfkGiLydqG+e+ Peaxi162Scf00016g00232.1 82 RLRENHENQVIGEEGGDFPVEVSYPAVFRCIRVSSVDNVVDQFAYQTSVNIGGHVFKGILYDQGPEN 148 77777777888889999**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-58	9	147	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.0E-25	11	52	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.1E-24	99	146	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MIMMRSSYSR CQDCGNKAKK DCSFLRCRTC CKSRGFQCQT HVKSTWIPVS TRRPRHHFHH 60 HQQLSTTIQQ QQLLQAGPNP KRLRENHENQ VIGEEGGDFP VEVSYPAVFR CIRVSSVDNV 120 VDQFAYQTSV NIGGHVFKGI LYDQGPENHY NNNMAVESSS FQQQPPNLLA AASTSAPISP 180 PPTSYPSPFS ANFMPGTQFF Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	3e-39	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602229.1	3e-92	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_016478329.1	3e-92	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	2e-54	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A1S4ANU4	8e-91	A0A1S4ANU4_TOBAC; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009602229.1	1e-91	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-44	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]