PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00009g00621.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 310aa MW: 34438.3 Da PI: 4.9346 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.6e-13 | 17 | 59 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T++E+el++++++ G++ W+ Ia+ ++ g+t++++k+ w++ Peaxi162Scf00009g00621.1 17 DNFTPQEEELIIKLHATIGSR-WSIIAQQLP-GKTDNDVKNLWNT 59 58*******************.*********.**********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 4 | 23 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.4E-16 | 5 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.045 | 11 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-11 | 15 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-12 | 18 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.37E-9 | 18 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 24 | 62 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
SQKVRWSNRL KPDLKEDNFT PQEEELIIKL HATIGSRWSI IAQQLPGKTD NDVKNLWNTK 60 LKKKLSAMGI DPVTHKPFSQ ILTDYGNIGG FPKARTHFVS LNRELKGAFM SRPEQFQHPL 120 EIFSNFNSHC LTTIKLPKAE ASEDCFLSNT NDSSNNQPPV DLLTELQAIK FVTDASNYSS 180 PKAIFSRSNP INDYSSSPLS SSSSSSASHS LSKTQVERAS PGLNWCDYLL DDAFIPSNFQ 240 VQEDTLTIED KLASGAAQDG QSNMPSMKDS ETSLSTRGAS SSSSSFVEDM LECENEMFLN 300 FPGLSEDPFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-13 | 5 | 65 | 48 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631987.1 | 1e-162 | PREDICTED: transcription factor MYB35 | ||||
TrEMBL | A0A1S3YM27 | 1e-158 | A0A1S3YM27_TOBAC; transcription factor MYB35-like | ||||
STRING | XP_009631987.1 | 1e-161 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12348 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 3e-29 | MYB family protein |