PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040429.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 412aa    MW: 46212.8 Da    PI: 8.3944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040429.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.52.8e-07232254123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C+ Cgk F+r  nL+ H+r H
  Pbr040429.1 232 HYCHVCGKGFKRDANLRMHMRAH 254
                  68*******************99 PP
2zf-C2H211.30.0011365380621
                  TTEEESSHHHHHHHHH CS
      zf-C2H2   6 CgksFsrksnLkrHir 21 
                  Cg++Fsrk+ L+ Hi 
  Pbr040429.1 365 CGTTFSRKDKLMGHIA 380
                  **************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.52E-6230257No hitNo description
SMARTSM003550.0069232254IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-6232256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.508232259IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
SMARTSM0035577295328IPR015880Zinc finger, C2H2-like
SMARTSM0035522333355IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MVSAAPSDCL QPMLQQQHHQ GLQNYEDPHR VSSFLLEPNS PTSSLGPENY STSLFYNLSV  60
LKEKVHQAKS LVNILISPDH HQSQPHESTT IAMSNVIQEI IVTASSMMFT CQKMALGSAT  120
IPGNNINNAT TSTTTGQGLS DHCDHNRLSQ TNFGVADSNK IDQSSFYSTH EQTLDWFSDS  180
FNDCTTRYTS TRIVNHSSHN DRHVQGKELP VSWKNYDIIE LDASDLLAKY THYCHVCGKG  240
FKRDANLRMH MRAHGDEYKT SDALSNPLKK NNNNNDTAGG IDGNTESSTK LPIKYSCPQE  300
GCRWNQKHAK FQPLKSMICV KNHYKRSHCP KMYVCKRCNR KQFSVLSDLR THEKHCGDLR  360
WQCSCGTTFS RKDKLMGHIA LFTGHTPVMI TSLTRSGKVD QQSHGSQMQL G*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040429.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372488.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT241e-108STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A498INF80.0A0A498INF8_MALDO; Uncharacterized protein
STRINGXP_009372488.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-108C2H2 family protein