PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr039365.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 40836 Da PI: 9.8031 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.8e-18 | 15 | 60 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ Pbr039365.1 15 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 58.7 | 1.3e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ Pbr039365.1 67 RRPFSEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 110 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.634 | 10 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-15 | 14 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-27 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.26E-14 | 18 | 59 | No hit | No description |
Pfam | PF13921 | 7.7E-18 | 18 | 78 | No hit | No description |
PROSITE profile | PS51294 | 27.384 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 69 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-7 | 78 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MEDYGDEAKS TSCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ 60 LDPKINRRPF SEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARRQREQS 120 KVCGKRSFQD FCNDHSPNTS SFSNNFDASR RLRSQGSSIG FDQNNISTKF FEFRNPNKDR 180 AMFMDSRPTS SSPYNWNFAS MSATSNNSSS SVDLLGRERR DYFNNGSSNY TITEFSKGLH 240 PQFVHRRHNP SSSLLYGRYR GSSSNAFGRP TNNRVNVPSP FGCLNPADHH INRHDQHGST 300 FKIGLANLYE NASTLQKWKV AATTTKFDDH DPLDHESIDH NKETPFIDFL GVGISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-31 | 15 | 115 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr039365.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360693.1 | 0.0 | PREDICTED: transcription factor MYB122-like | ||||
TrEMBL | A0A498IUV3 | 0.0 | A0A498IUV3_MALDO; Uncharacterized protein | ||||
STRING | XP_009360693.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-61 | myb domain protein 52 |