PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr039284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 479aa MW: 53334.7 Da PI: 8.3372 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2e-16 | 124 | 170 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd+ +++ v+++G ++W+ Ia+ ++ gR +kqc++rw+++l Pbr039284.1 124 KGAWIKEEDDCIIKQVEKHGAKRWSVIAKFLP-GRIGKQCRERWHNHL 170 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 176 | 218 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r++WT++E+++++ +++++G++ W+ Iar ++ gRt++ +k++w+ Pbr039284.1 176 RDAWTKDEEQIIAYYHQLYGNK-WAEIARFLP-GRTDNAIKNFWN 218 789*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.595 | 51 | 118 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.8E-11 | 55 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-6 | 55 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-16 | 58 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-8 | 58 | 118 | No hit | No description |
PROSITE profile | PS51294 | 27.629 | 119 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.79E-29 | 121 | 217 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-13 | 123 | 172 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 124 | 170 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.91E-14 | 126 | 170 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-24 | 131 | 177 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.995 | 175 | 225 | IPR017930 | Myb domain |
SMART | SM00717 | 7.5E-16 | 175 | 223 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 176 | 218 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 178 | 224 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-11 | 178 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MTKINREHPE DAGIGSHEKM GFLFQALYEA EYCSDSPFPK PSSIHWRTTG PTRRSAKSWT 60 AEEDNLLGEL VTKFNRSSWK KIEAGSSFVH EDYFLISAAA CLPGRTDIQC LQRWKKVLNP 120 EVVKGAWIKE EDDCIIKQVE KHGAKRWSVI AKFLPGRIGK QCRERWHNHL CPAINRDAWT 180 KDEEQIIAYY HQLYGNKWAE IARFLPGRTD NAIKNFWNCT LKRKFDSYSP NGCEVDMQSD 240 VLSGEARTDR LEVEEDGQIS DCVVSLNQLT ETEISDNACS TELTLGFSYS HDICSEWKSV 300 KVQKRRSTEG RASSLINPQI ATPFAFMDAS TCTKSNCIPP TRPPCYSTPR SLAQNTSVSS 360 GSPGSRLKNL ALSFKNTPSI IRKKSSRRTD PSNFPDVNSS KACSTLSSTS GGEGTNSKDF 420 ANGKFGSFSF RHRPQTSAAV KSLGRRLERE FDAEKDSGSD QCGHALSAYA SPDVGFGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-58 | 59 | 224 | 9 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-58 | 59 | 224 | 9 | 158 | MYB PROTO-ONCOGENE PROTEIN |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr039284.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009345451.2 | 0.0 | PREDICTED: myb-like protein Q | ||||
TrEMBL | A0A498JYP9 | 0.0 | A0A498JYP9_MALDO; Uncharacterized protein | ||||
STRING | XP_009345451.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13301 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 4e-71 | myb domain protein 3r-4 |