PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039129.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 612aa    MW: 66189.9 Da    PI: 7.0063
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039129.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.8e-29270328259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK  kg+++pr+YYrC+ + +Cpv+k+v+rs ed +++++tYeg+Hnh+
  Pbr039129.1 270 YDGCQWRKYGQKIAKGNPCPRAYYRCSVSaSCPVRKQVQRSFEDMSILITTYEGSHNHP 328
                  59*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-30254330IPR003657WRKY domain
SuperFamilySSF1182901.01E-25262330IPR003657WRKY domain
PROSITE profilePS5081128.759264330IPR003657WRKY domain
SMARTSM007743.9E-35269329IPR003657WRKY domain
PfamPF031069.4E-26271328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MEMPKRPSKA LMESDNTHEE TSSLGKTVLE DKTVKSDGDH EEGTPMEIAK GGHGWHVEPD  60
LEPPSTGKNR ALVNHKQDEL QSAKAEMVEA TEENERLKLL LSQISKDYQS LRMHFHGLLQ  120
NGGETKKCTD TSSSTALDLT HEQNTEEADD LVSLSLGRTL SSIDQPRKDG RIKKISQLSF  180
STNGKDDDDD NGMLNGAGLA LELGCKFEPA ADQSTDNSSG GPKEDDLAEI WPPSKTLKTT  240
RSGDDEASQQ THSKKARVSV RVRCDDHTIY DGCQWRKYGQ KIAKGNPCPR AYYRCSVSAS  300
CPVRKQVQRS FEDMSILITT YEGSHNHPLP MSATAMASTT SAAASMLQSH SSTSQQGLIN  360
STTAPISAST NLQGVNFSST STLSQNSRLP QKHFYFPNSS ISTNNSHPTI TLDLTVPSPS  420
HFGILPSASG SSFSSNPRYP STSLNFSSSS DHNNTLQLKS PWNNINHTAS GYFNYGNRIN  480
QVGSALNIGK QPIFQEHNKV YQSYSYIQNQ NPSSPLHHPQ MLNDSTATAT KAITSNPKFQ  540
SALAAALTSF VGNGSTSSTT GIRESHQSTV TIAESASGLK LKRGESLTSN SIFPSSQNGI  600
GCASSYLNKS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-19256330174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039129.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360380.10.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A498IDE80.0A0A498IDE8_MALDO; Uncharacterized protein
STRINGXP_009360380.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.11e-63WRKY DNA-binding protein 61