PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr034115.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 522aa    MW: 57429.7 Da    PI: 7.0017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr034115.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.41.4e-33226283260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Pbr034115.1 226 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 283
                  8****************************************.***************85 PP
2WRKY106.11.8e-33397455159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Pbr034115.1 397 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYPGCPVRKHVERASHDLRAVITTYEGKHNHD 455
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-28217284IPR003657WRKY domain
SuperFamilySSF1182901.7E-25224284IPR003657WRKY domain
SMARTSM007749.2E-37225283IPR003657WRKY domain
PROSITE profilePS5081123.893226284IPR003657WRKY domain
PfamPF031061.1E-25226282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-37382456IPR003657WRKY domain
SuperFamilySSF1182906.02E-29389455IPR003657WRKY domain
PROSITE profilePS5081136.059392457IPR003657WRKY domain
SMARTSM007742.6E-39397456IPR003657WRKY domain
PfamPF031066.3E-26398455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MASSSGSLET SANSHPAAFT FSTHPFMTTS FSDLLASGTN EDSNPPRYIG HGGLSDRIAE  60
RTGSGVPKFK SLPPPSLPIS PPSISPSSYF AIPPGLSPAE LLDSPVLLNT SNILPSPTTG  120
SLAAHGAFNW KNNQQNVKQE SKNYSDFSFQ TQARPPISSS SSMFQSSNTS NQTAWNNYVQ  180
AQEPPKQEYG SVQSLPSEMT TQTLQNNTPT NGGFYHQSQT LSRKSDDGYN WRKYGQKQVK  240
GSENPRSYYK CTYPNCPTKK KVERSLDGQI TEIVYKGNHN HPKPQNTRRS SSNSHAIPAS  300
DATNNELPDQ TYANYGNSQM DSIGTPENSS ISIGDDDFEQ SSQRSKSGGG EEFDEDEPNA  360
KKWKKDADHN EGISAPGGRT VREPRVVVQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY  420
YKCTYPGCPV RKHVERASHD LRAVITTYEG KHNHDNLRQP TSEGQAPFTG LEMLQSQGTY  480
GFAGFDGNSM GYMNQAQLSD NMFSKAKEEP RDDAFFESLL R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35226455877Probable WRKY transcription factor 4
2lex_A2e-35226455877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr034115.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499749.10.0PREDICTED: probable WRKY transcription factor 26 isoform X2
SwissprotQ6B6R41e-139WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A498IU590.0A0A498IU59_MALDO; Uncharacterized protein
STRINGXP_009342223.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-102WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]