PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr032743.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 387aa MW: 42256.3 Da PI: 9.2691

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr032743.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.3	6.1e-16	22	113	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt e++ Liea++ ++er ++ ++ +W++v ++++++g+ r+++qC++kw+nl ++ykk++e e+k t Pbr032743.1 22 WTVGETMILIEAKKMDDERRMKRTgggegassgggtdqttrsmskPAELRWKWVEDYCWKKGCLRNQNQCNDKWDNLMRDYKKVREYERKIT 113 ***********96666555433345566666677777777766999**************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.098	14	99	IPR017877	Myb-like domain
Pfam	PF13837	2.0E-11	21	111	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MAEQGGNGTS RVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRTGGGEG ASSGGGTDQT 60 TRSMSKPAEL RWKWVEDYCW KKGCLRNQNQ CNDKWDNLMR DYKKVREYER KITNVGKGKG 120 EEGSASYWKL EKNERKERNL PTNMVPQIYE ALVDVVERRE AAAAAAAAGY QIRGHEVVGG 180 ASVSGPNVGI NPNIGYGLER PIINTTNVHQ QPSSSLPSPP VLQHHHHHQI SVPTIAALPL 240 LPPAPLAAQP PPALPYAQVM PTVDSDTSEH SDSPAKRRRR ASGRGGGGGE DQGGTSGTVS 300 ASISSEVGTA IARGASMIAE ALQGCEEREE RRHREMLNLH ERRLQIEETK TEINRQGING 360 LTDAINKLAN SIHALASNKN QQPPPN*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MAEQGGNGTS RVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRTGGGEG ASSGGGTDQT  60
TRSMSKPAEL RWKWVEDYCW KKGCLRNQNQ CNDKWDNLMR DYKKVREYER KITNVGKGKG  120
EEGSASYWKL EKNERKERNL PTNMVPQIYE ALVDVVERRE AAAAAAAAGY QIRGHEVVGG  180
ASVSGPNVGI NPNIGYGLER PIINTTNVHQ QPSSSLPSPP VLQHHHHHQI SVPTIAALPL  240
LPPAPLAAQP PPALPYAQVM PTVDSDTSEH SDSPAKRRRR ASGRGGGGGE DQGGTSGTVS  300
ASISSEVGTA IARGASMIAE ALQGCEEREE RRHREMLNLH ERRLQIEETK TEINRQGING  360
LTDAINKLAN SIHALASNKN QQPPPN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr032743.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009341205.1	0.0	PREDICTED: uncharacterized protein LOC103933261
TrEMBL	A0A498JTG6	0.0	A0A498JTG6_MALDO; Uncharacterized protein
STRING	XP_009341205.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-59	Trihelix family protein