PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031548.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 348aa    MW: 38485.4 Da    PI: 5.5888
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031548.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.1e-29136197159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK++ g+++pr+YYrCt++   +C ++k+v+rs+edp+++eitY+g+H+++
  Pbr031548.1 136 LDDGFSWRKYGQKDILGARYPRGYYRCTHRnvqDCFATKQVQRSNEDPTIFEITYRGRHTCT 197
                  59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.01131194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-28132198IPR003657WRKY domain
SuperFamilySSF1182901.26E-25135198IPR003657WRKY domain
SMARTSM007741.3E-39136198IPR003657WRKY domain
PfamPF031064.3E-26137196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MENCNIHWEQ RSLVNELAQG RELARQLQIH LNAPSSSHGT RELLVQKIIL SYEKALSILN  60
SIGSPSGCEQ QQPAGHVATR MVESPPHSLN GSPWSEDSDR EFKDHDNKDS SGKRKTLPRW  120
TQQIRVTSGM GLEGPLDDGF SWRKYGQKDI LGARYPRGYY RCTHRNVQDC FATKQVQRSN  180
EDPTIFEITY RGRHTCTQAS PGTSTPPSPS PLPPERTEPQ NNPVESQPNQ QHSQQNMLLN  240
LPEGLRVISE GLDISEELFP SFNNPSPLNN NYLGSFSPPF AGPTTSGTNY FSMSQQGFGA  300
EQNIQSGDII SPATSAANSP SVGLDFPFSQ DDQLFPNFSF DGPGFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19136196868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031548.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357327.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A498JMW80.0A0A498JMW8_MALDO; Uncharacterized protein
STRINGXP_009357327.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-55WRKY family protein