PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WRKY | ||||||||
Protein Properties | Length: 323aa MW: 35007.5 Da PI: 5.9907 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.1 | 3.1e-32 | 167 | 224 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp++v++tYeg+H h+ Pbr029950.1 167 EDGYRWRKYGQKAVKNSPFPRSYYRCTNTKCTVKKRVERSSQDPTTVITTYEGQHCHH 224 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-33 | 151 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.02E-27 | 159 | 224 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.712 | 161 | 226 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 166 | 225 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-25 | 167 | 224 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MDDDNEKRDP LTTTEFPTQS TWTPDSDSAY FFNTHDRDNN ILSEFGWIFN PDASKPDDCF 60 PCLDPIAAAA DTSDLAGTTS SGPLVLENNS SSSSAAFGSP DPAPVVGSAS TNPSASTSSS 120 EDPPERSTGS GGKPPPEIPS KVKMKGPKRI RQPRFAFITK SEVDHLEDGY RWRKYGQKAV 180 KNSPFPRSYY RCTNTKCTVK KRVERSSQDP TTVITTYEGQ HCHHTVAFPR GGVIGHESGF 240 AGHQLAQLPP ASQFMYYPTI RPREITSPIN LTPTSSHQVV VPRHDDDQAA GGSSHSTDPQ 300 LTPPFPTDEG LLGDIVPPGM RN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 159 | 223 | 10 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 159 | 223 | 10 | 74 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356380.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 isoform X1 | ||||
Refseq | XP_018502979.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 isoform X1 | ||||
Swissprot | Q9C983 | 3e-69 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | A0A498IE70 | 0.0 | A0A498IE70_MALDO; Uncharacterized protein | ||||
STRING | XP_009356380.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10814 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 1e-64 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
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