PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029043.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 514aa    MW: 57446 Da    PI: 6.2746
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029043.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005495116223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C  C+k F++  +L+ H+r+H
  Pbr029043.1  95 SCYVCKKDFPSIKSLHGHMRLH 116
                  69******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.664163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6164168IPR007087Zinc finger, C2H2
PfamPF139122.9E-64263IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SMARTSM003550.7194116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.95494121IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-795116No hitNo description
PfamPF139121.2E-596118IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-7440467No hitNo description
PfamPF139122.4E-6445467IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.512445472IPR007087Zinc finger, C2H2
SMARTSM003550.19445467IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280447467IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MDDHDVHEQE IEEQVALRGD DYHKGKQVVL ESDVHHRSGD RVCEQCGKRF QNGKALGGHR  60
KVHLNQSLLP QKNKALFKQQ KKHGSSKGGS SSEVSCYVCK KDFPSIKSLH GHMRLHRERD  120
WKGVRPPGAV QPLSEESKSS SYEHGSDDDG EDDGNDDGYG DSSFSDHTIE TDNDAAIFLV  180
NWRNIEQRRR IAYQRDPNGE DKVGEFGRKK LIEESPVGYK GNPSSKNIKF DDGSKKITKE  240
GSKNFGGAKP KKDFSLFGQT HKQISRKPQE FRVTRSDATL SDMNVDESAG FSSKYAAHQV  300
SESALEKAIE KSPVGYKGNK TSEKSRSESV NFVPNKLSIG GKEKASVDNY DDADDDDHDD  360
ENVDQTSWKV KLKKAKMKEV SKTGKKTIKD TALNDQTHYQ ISRRTQEFGA KYAERENYNG  420
PSATSNQVLE RAEEVEAVEH ETKEFVCNIC PSKFSTVQAL GGHKRCHNNR VPVEEAPETA  480
EVAPVAEEDG EITTVPEKLD LDLNQLPYES NDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029043.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503391.10.0PREDICTED: uncharacterized protein LOC103948994
TrEMBLA0A498K8B00.0A0A498K8B0_MALDO; Uncharacterized protein
STRINGXP_008358936.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16199410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.17e-16C2H2 family protein