PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028600.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 444aa    MW: 47929.1 Da    PI: 8.0956
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028600.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.1e-115277227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C+++ rtG C++G++C+F+H+p
  Pbr028600.1 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77
                 5799********************97 PP
2zf-CCCH24.16.4e-081091231327
                  S--TTTTT-SS-SSS CS
      zf-CCCH  13 GtCkyGdrCkFaHgp 27 
                  GtCk+G++CkF+H++
  Pbr028600.1 109 GTCKFGATCKFHHPR 123
                  9************96 PP
3zf-CCCH38.22.4e-12145169327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C +++rtG+Ck+G++CkF+H++
  Pbr028600.1 145 EVECAYYLRTGQCKFGSTCKFHHPQ 169
                  689********************97 PP
4zf-CCCH37.93e-12304330127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G+ C+F+H++
  Pbr028600.1 304 PGQPECQFYMKTGDCKFGAVCRFHHPR 330
                  5789*********************96 PP
5zf-CCCH40.73.9e-13350376127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f++r+G+Ck+G++CkF+H++
  Pbr028600.1 350 PGEPLCIFYSRYGICKFGPSCKFNHPM 376
                  589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2675078IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-55077IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-85277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-55578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-45676IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.10895124IPR000571Zinc finger, CCCH-type
SMARTSM003560.9698123IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5109123IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356142170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6144170IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4148168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596303331IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6303330IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5307333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5309331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727349377IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7349376IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10351376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5352376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4354374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDFDAGIPMS RAAAPVTDAR SLSPSLTQDA MWQMNLRSSE TMEAGAYPER TGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIAAARMKG EFPERIGQPE CQACISVEGT CKFGATCKFH  120
HPRDKAGMAG RVALNILGYP LRPNEVECAY YLRTGQCKFG STCKFHHPQP TNMMVSVGAS  180
PVYPTVQSPT TPGQQSYAGG ITNWSRASFI PSPRWQAQSS YAPLIVPQGV VSVPGWNAYS  240
GQLGSVSSPE SQQQTAGNSQ MYGTSHQGEP ENSGSQGGFS PYSSGSIPVG FYALQRENVF  300
PERPGQPECQ FYMKTGDCKF GAVCRFHHPR ERLIPAPDCV LSPMGLPLRP GEPLCIFYSR  360
YGICKFGPSC KFNHPMGIFT LNLSASSSAD APARRLLGST SGAASLNLSS EGLVEAGSAK  420
PRRLSLSEPR QMPSAEDNID TEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028600.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338000.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A314Z9W70.0A0A314Z9W7_PRUYE; Zinc finger CCCH domain-containing protein ZFN-like isoform X3
STRINGXP_009337999.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1