PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr028600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 444aa MW: 47929.1 Da PI: 8.0956 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.1e-11 | 52 | 77 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Pbr028600.1 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77 5799********************97 PP | |||||||
2 | zf-CCCH | 24.1 | 6.4e-08 | 109 | 123 | 13 | 27 |
S--TTTTT-SS-SSS CS zf-CCCH 13 GtCkyGdrCkFaHgp 27 GtCk+G++CkF+H++ Pbr028600.1 109 GTCKFGATCKFHHPR 123 9************96 PP | |||||||
3 | zf-CCCH | 38.2 | 2.4e-12 | 145 | 169 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Pbr028600.1 145 EVECAYYLRTGQCKFGSTCKFHHPQ 169 689********************97 PP | |||||||
4 | zf-CCCH | 37.9 | 3e-12 | 304 | 330 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Pbr028600.1 304 PGQPECQFYMKTGDCKFGAVCRFHHPR 330 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.7 | 3.9e-13 | 350 | 376 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ Pbr028600.1 350 PGEPLCIFYSRYGICKFGPSCKFNHPM 376 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.267 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-8 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 55 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-4 | 56 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.108 | 95 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.96 | 98 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-5 | 109 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-6 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 142 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 144 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-10 | 145 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 148 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 303 | 331 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 303 | 330 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-9 | 305 | 330 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-5 | 307 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 309 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.727 | 349 | 377 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-7 | 349 | 376 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 351 | 376 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-5 | 352 | 376 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 354 | 374 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MDFDAGIPMS RAAAPVTDAR SLSPSLTQDA MWQMNLRSSE TMEAGAYPER TGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIAAARMKG EFPERIGQPE CQACISVEGT CKFGATCKFH 120 HPRDKAGMAG RVALNILGYP LRPNEVECAY YLRTGQCKFG STCKFHHPQP TNMMVSVGAS 180 PVYPTVQSPT TPGQQSYAGG ITNWSRASFI PSPRWQAQSS YAPLIVPQGV VSVPGWNAYS 240 GQLGSVSSPE SQQQTAGNSQ MYGTSHQGEP ENSGSQGGFS PYSSGSIPVG FYALQRENVF 300 PERPGQPECQ FYMKTGDCKF GAVCRFHHPR ERLIPAPDCV LSPMGLPLRP GEPLCIFYSR 360 YGICKFGPSC KFNHPMGIFT LNLSASSSAD APARRLLGST SGAASLNLSS EGLVEAGSAK 420 PRRLSLSEPR QMPSAEDNID TEE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr028600.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009338000.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A314Z9W7 | 0.0 | A0A314Z9W7_PRUYE; Zinc finger CCCH domain-containing protein ZFN-like isoform X3 | ||||
STRING | XP_009337999.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |