PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr028332.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 418aa MW: 45321.1 Da PI: 8.3031

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr028332.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	4.9e-32	298	351	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Pbr028332.1 298 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 351 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-15	295	352	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-28	296	352	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	298	351	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-7	299	350	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MLREKGLSSE AAAGGRSCLA LNPIPDLSLH ISPPNTNTNS APSSICTDRV TPDHDSTSCF 60 DIWRRDTDED YTNGAALANK SHSDSCIRAS YTSSSPVAAA ADTELSLANP SALEAESAWK 120 KNYFGGGDGY NDEAKNSGNS VTSSNGISML ERLKPIKGIP VYSTSSTNCS FPPSFSPNPV 180 YQKAPYLSNS FRPAAPARNC SGRGMGMGLG GFNGITMDSL SLGVGGVQQQ QQQHQRQHHF 240 PSYNLNPYYP QQLQQHHCVG GGGNYNADLS SNGFTMRSKF TPPKLIGQNI NKRNMRAPRM 300 RWTTSLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKNTDKPLA 360 SSDGSGDEDL LSITNHHHNS NSNGLLNQRG ASNATLNLEH DHMEHRPFNN LWGNSSR*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MLREKGLSSE AAAGGRSCLA LNPIPDLSLH ISPPNTNTNS APSSICTDRV TPDHDSTSCF  60
DIWRRDTDED YTNGAALANK SHSDSCIRAS YTSSSPVAAA ADTELSLANP SALEAESAWK  120
KNYFGGGDGY NDEAKNSGNS VTSSNGISML ERLKPIKGIP VYSTSSTNCS FPPSFSPNPV  180
YQKAPYLSNS FRPAAPARNC SGRGMGMGLG GFNGITMDSL SLGVGGVQQQ QQQHQRQHHF  240
PSYNLNPYYP QQLQQHHCVG GGGNYNADLS SNGFTMRSKF TPPKLIGQNI NKRNMRAPRM  300
RWTTSLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKNTDKPLA  360
SSDGSGDEDL LSITNHHHNS NSNGLLNQRG ASNATLNLEH DHMEHRPFNN LWGNSSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	299	353	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	299	353	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	299	353	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	299	353	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr028332.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018502916.1	0.0	PREDICTED: transcription repressor KAN1-like isoform X2
TrEMBL	A0A498JL54	0.0	A0A498JL54_MALDO; Uncharacterized protein
STRING	XP_009355983.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1756	33	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	3e-38	G2-like family protein