PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr025725.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 450aa MW: 51084.3 Da PI: 6.6955 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 65.3 | 1.3e-20 | 122 | 218 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ++++ +++ +kk++W+ s+ m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d + Pbr025725.1 122 KWTDNVVRLLIDVVACVGDDGSDEGgeglkrksgilQKKGKWKTLSQIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMDAM 218 7**************888888875335666778888**********************************************569999998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.5E-18 | 120 | 245 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MDSSGLGGGF LSGPSGGILD LESPVPRRQE MQLGHQLLGH HQHHMNVMGG GGIAGDCHPI 60 GLVEVKGSVP KVGSTIAKGK AVASFNGNNG YNLSDDDEQN YTDDESIEGA KGKKGSRWQR 120 MKWTDNVVRL LIDVVACVGD DGSDEGGEGL KRKSGILQKK GKWKTLSQIM ISKGCHVSPQ 180 QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDAMPH LSAKAKDDVR KILSSKHLFY 240 KEMCAYHNGQ RIPDCQELNP HGYSLPLGRC SKDINGSEEE EAEENHDSED DKLDNEDHNN 300 ADNDRERMRR MSERKKAREE DGHMWPQHVP LDSFEVEVGD CFQDATKSLW ERRDWIKKQK 360 LQLEEQRVSF HAEALEIEKQ RYKWLRYCSK KDRELERLRL ENERMKLENE RRVLQLRQKE 420 VELDLRRSEA SLEPSSLGLG RDHIDLGRH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 304 | 315 | RERMRRMSERKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr025725.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009355179.1 | 0.0 | PREDICTED: myb/SANT-like DNA-binding domain-containing protein 4 | ||||
TrEMBL | A0A498IKR0 | 0.0 | A0A498IKR0_MALDO; Uncharacterized protein | ||||
STRING | XP_009355179.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 4e-61 | sequence-specific DNA binding transcription factors |