PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr023818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 410aa MW: 46218.4 Da PI: 7.1584 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3.1e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ Pbr023818.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99****6666.*************5 PP | |||||||
2 | zf-CCCH | 21.9 | 3.1e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C +G+rC++ H+ Pbr023818.1 34 ICTFYLK-GACAFGSRCRYEHV 54 7******.***********997 PP | |||||||
3 | zf-CCCH | 19.1 | 2.4e-06 | 143 | 165 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg Pbr023818.1 143 HAICS-FAAAGNCPRGEKCPHIHG 165 57899.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.671 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.117 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.784 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 4.42E-13 | 198 | 273 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.2E-9 | 204 | 269 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 4.40E-4 | 208 | 268 | No hit | No description |
Pfam | PF13639 | 5.3E-7 | 208 | 267 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 1.4E-7 | 209 | 266 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.43 | 209 | 267 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 233 | 242 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.054 | 296 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.347 | 296 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MSKRVLCKFF AHGACLKGEH CEFSHDWKAS PNNICTFYLK GACAFGSRCR YEHVKASRAQ 60 SFGSSSSTNS QPSLVIDSAS LVLPARTLAS GVSLAPLSLS ELSASSSPFL PPSKPAWNGS 120 LDGDYDDDEG SVGETRNTRP EDHAICSFAA AGNCPRGEKC PHIHGDICPS CGKHCLHPYR 180 HLEREEHMKI CKEKQKQLEA LKCSQEIECS VCLERVLSKP TVAERKFGIL SECDHPFCIS 240 CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY KSKEEKQEIV DSYKARLRSI 300 DCKHFDFGNG NCPFGTSCFY KHTVKPGSYV WKFHRPPPRR PPPRRPPPRR YDIAPMDVIF 360 HMFEHLEELD DYIFEDLENE VLNSWERESL MQMGLYTSDS SEDEIDLWP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr023818.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354722.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1 | ||||
Swissprot | E0X9N4 | 1e-145 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | M5XJS3 | 0.0 | M5XJS3_PRUPE; Uncharacterized protein | ||||
STRING | XP_009354722.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10211 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-132 | C3H family protein |
Publications ? help Back to Top | |||
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