PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023129.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 607aa    MW: 66046.5 Da    PI: 7.5716
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023129.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05143164223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C  Cgk F++  +L  H+r+H
  Pbr023129.1 143 VCCVCGKNFPSMKSLFGHMRSH 164
                  6********************9 PP
2zf-C2H211.30.0011431453123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C k+F+++  L  H+++H
  Pbr023129.1 431 YKCNLCAKCFPSHQALGGHMSSH 453
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.26789IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0786794IPR007087Zinc finger, C2H2
PfamPF139121.6E-66989IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM003550.092142164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349142169IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-8143164No hitNo description
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
PfamPF139122.9E-6144166IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-8426453No hitNo description
PfamPF139122.4E-6430454IPR007087Zinc finger, C2H2
SMARTSM003550.014431453IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575431458IPR007087Zinc finger, C2H2
PROSITE patternPS000280433453IPR007087Zinc finger, C2H2
SuperFamilySSF576678.5E-5495522No hitNo description
PfamPF139127.2E-13497521IPR007087Zinc finger, C2H2
SMARTSM003550.028498520IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494498520IPR007087Zinc finger, C2H2
PROSITE patternPS000280500520IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MDIEHQETRF PPLAASDQER KPPKKLSGEE MESNNGGLSL KLKVAKPEPL GQNPQNFSAA  60
PLPEFTRFCE VCLKGFSSGK ALGGHMRMHV QANKELFNQS RKNTISSKPN NSKPRNSNVG  120
SSNAGGILGI GGNSSSISNM KPVCCVCGKN FPSMKSLFGH MRSHPEREWR GIQPPPTAKN  180
SSSSTVSDAV PDQSNRKAQE DQIESDEKFF RSKSSVLNLS KTLPKWSQTA GRGRKXXXXX  240
XXXXXXXXXX RGRKSGSTGF ESDSDQSVSG LDSRSPRTVE EDEEQMEEAV HDLLMLAQAN  300
PLEGGGADET MCEVTNSNFL ITTNQDREGG LPYHGYTAPA TVGSTNKRKG ASSEVKRSDK  360
KWYDAYGGGF GQEKSTVKNF LKLGLMEEEN IGNHNNMEDE LSDSQNSESI PVVRRKRRKM  420
KLVDLEGRLR YKCNLCAKCF PSHQALGGHM SSHNKLKGIT VAHSSMEDQS ASADDPAAED  480
RVHGDEAERV ALDHQQHHQC KICNKTFPTG QALGGHKRCH WTGPTEQQQQ QQVVVVGPSE  540
QLQQQLQGHS SQTIVGGGGG GKVLNFDLNE LPPMEEDNQE GAGTGYQYGG AAAAGCSTSS  600
YNSVTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023129.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008344757.30.0hypermethylated in cancer 2 protein-like
TrEMBLA0A498K9120.0A0A498K912_MALDO; Uncharacterized protein
STRINGXP_009379141.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-20zinc-finger protein 2