PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021316.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 327aa    MW: 35789.6 Da    PI: 7.061
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021316.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.7e-33171228259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers edp++v++tYeg+Hnh+
  Pbr021316.1 171 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYEDPSTVITTYEGQHNHP 228
                  8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-35155230IPR003657WRKY domain
SuperFamilySSF1182906.15E-30162230IPR003657WRKY domain
PROSITE profilePS5081132.202165230IPR003657WRKY domain
SMARTSM007745.0E-39170229IPR003657WRKY domain
PfamPF031062.7E-26171228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSDQEPKDLY YHDLFQYEDH DGGMVSINNH PNLQGFDVNP SYMNLTECLK GSMDYNSLAT  60
AFGLSSSTSE ALFSSIEGDQ KPANHLGYSG GGGGGDVTPL TPNSSMSSSS AEVGADEDCG  120
KNKKDRQPKG SSEDGGDSSK KVSKLAKNKG EKKQREPRFA FMTKSEVDHL EDGYRWRKYG  180
QKAVKNSPYP RSYYRCTTPK CGVKKRVERS YEDPSTVITT YEGQHNHPLP ATLRGNAAAA  240
LFPPSMLNLA PATRTFSTLA AGGPSSAFSQ EFLFQMPQYM ISNNANQGSS RNPNYHLQQH  300
QLPHGAADQY GLLQDLVPSM FLKQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-32160231778Probable WRKY transcription factor 4
2lex_A4e-32160231778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353824.10.0PREDICTED: probable WRKY transcription factor 71
RefseqXP_009360850.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ27e-66WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A498IYP60.0A0A498IYP6_MALDO; Uncharacterized protein
STRINGXP_009353824.10.0(Pyrus x bretschneideri)
STRINGXP_009360850.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-58WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]