PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr019738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 225aa MW: 23914.7 Da PI: 6.9471 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 112 | 131 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ykC+ C+ksF++ L H Pbr019738.1 112 YKCSVCDKSFPTGQALGGHK 131 9**********988886665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.43E-6 | 111 | 136 | No hit | No description |
Pfam | PF13912 | 1.1E-13 | 112 | 136 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.45 | 112 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.007 | 112 | 134 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.0E-4 | 112 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MALQALNSPT AAGPSPFPFE NEASSLGYAE PWTKRKRSKR PRLDTPHSEE EYLAICLIML 60 ARGNRGGDLA STTATAATDT KETNSAASHQ IITQSPSMEP STSAAPPVKL SYKCSVCDKS 120 FPTGQALGGH KRCHYDGGAA GSTATTTATT SVITSSEGVG STSHAVSHGH PRETFDLNLP 180 ALPEFSRDFF VSGEDEVESP HPTKKPRLLL MMKPKIEISQ DQQN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr019738.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY279310 | 5e-41 | AY279310.1 Malus x domestica enolase-like mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354104.1 | 1e-121 | PREDICTED: zinc finger protein ZAT10 | ||||
TrEMBL | D9ZIT4 | 1e-112 | D9ZIT4_MALDO; C2H2L domain class transcription factor | ||||
STRING | XP_009354104.1 | 1e-121 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 2e-33 | salt tolerance zinc finger |